View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1318_low_107 (Length: 303)
Name: NF1318_low_107
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_107 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 28 - 223
Target Start/End: Complemental strand, 36937042 - 36936847
Alignment:
| Q |
28 |
ataatattactctaaaatttgccattgaaagagacatgaattcagttatctttgagtctaatggtaaaattgttatagatgttgttaattctgaactaat |
127 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
36937042 |
ataatattactctaaaatttggtattgaaagagacatgaattcagttatctttgagtctaatggtaaaattgttatagatgttgttaattctaaactgat |
36936943 |
T |
|
| Q |
128 |
tcgccataatgaattgggagatattattaatagatgtaaggatctattgacatctcatctcacaatggttatgttgtgaggaggcaaactaataag |
223 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
36936942 |
tcgtcataatgaattgggagacattattaatagatgtaaggatctattgacatctcatcttacaatggttatgttgtgaggaggcaagctaataag |
36936847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 3898054 - 3898013
Alignment:
| Q |
144 |
ggagatattattaatagatgtaaggatctattgacatctcat |
185 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
3898054 |
ggagatattatttatagatgtaaggatctattgtcatctcat |
3898013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 3884216 - 3884164
Alignment:
| Q |
132 |
cataatgaattgggagatattattaatagatgtaaggatctattgacatctca |
184 |
Q |
| |
|
|||||||| || |||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
3884216 |
cataatgagttcggagatattatttctagatgtaaggatctattgtcatctca |
3884164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 40 - 183
Target Start/End: Original strand, 11255095 - 11255235
Alignment:
| Q |
40 |
taaaatttgccattgaaagagacatgaattcagttatctttgagtctaatggtaaaattgttatagatgttgttaattctgaactaattcgccataatga |
139 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
11255095 |
taaaatttgctattgaaagagacatgaattcagttatctttgagtctgatagtaaaattgttatagatgttgttaattctgaactaatt---cagaatga |
11255191 |
T |
|
| Q |
140 |
attgggagatattattaatagatgtaaggatctattgacatctc |
183 |
Q |
| |
|
||| ||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
11255192 |
attaggagacattattaatagatgtaaggatctattggcatctc |
11255235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 40 - 183
Target Start/End: Original strand, 29176671 - 29176813
Alignment:
| Q |
40 |
taaaatttgccattgaaagagacatgaattcagttatctttgagtctaatggtaaaattgttatagatgttgttaattctgaactaattcgccataatga |
139 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
29176671 |
taaaatttgctattaaaagagacatgaattcagttatcttcgagtctgatagtaaaattgttatagatgttgttaattctgaactaattccacataatga |
29176770 |
T |
|
| Q |
140 |
attgggagatattattaatagatgtaaggatctattgacatctc |
183 |
Q |
| |
|
||| ||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
29176771 |
att-ggagacattattaatagatgtaaggatctattggcatctc |
29176813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 30840844 - 30840891
Alignment:
| Q |
62 |
catgaattcagttatctttgagtctaatggtaaaattgttatagatgt |
109 |
Q |
| |
|
|||||| ||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
30840844 |
catgaactcagttatctttgagtccgatagtaaaattgttatagatgt |
30840891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University