View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_109 (Length: 286)
Name: NF1318_low_109
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_109 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 30 - 274
Target Start/End: Complemental strand, 47053119 - 47052896
Alignment:
| Q |
30 |
tgtccaagtaagctaagtgtatgtttgtttggattggtggtgagttcgaaaaaattacgatgacattttgtaaaattacgatgacattggttctatatat |
129 |
Q |
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| T |
47053119 |
tgtccaagtaagctaagtgtatgtttgtttggattggtggtgagttcgaaaaa---------------------attacgatgacattggttctatatat |
47053041 |
T |
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| Q |
130 |
agttttttcttttacaaaggttatatagtttttataatttgaatctcctaaggaatatgcatgttagttaaaaattgtaatagttaaaactgtnnnnnnn |
229 |
Q |
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| T |
47053040 |
agttttttcttttacaaaggttatatagtttttataatttgaatctcctaaggaatatgcatgttagttaaaaattgtaatagttaaaactgtaaaaaaa |
47052941 |
T |
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| Q |
230 |
taaatgattacataggtaaattatgaaattattgaaagctatatt |
274 |
Q |
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| T |
47052940 |
taaatgattacataggtaaattatgaaattattgaaagctatatt |
47052896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 163
Target Start/End: Complemental strand, 47049782 - 47049746
Alignment:
| Q |
127 |
tatagttttttcttttacaaaggttatatagttttta |
163 |
Q |
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| T |
47049782 |
tatagttttttcttttacaaaggttatatagttttta |
47049746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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