View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_110 (Length: 285)
Name: NF1318_low_110
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_110 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 43802385 - 43802102
Alignment:
| Q |
1 |
aatatccaagtaacttaactttgacaaatcattttcttctactaatttcttcgccccaaccacgttatctagctcttgttggagatttttcatcactctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43802385 |
aatatccaagtaacttaactttgacaaatcattttcttctactaatttgttcgccccaaccacgttatctagctcttgttggagatttttcatcactctt |
43802286 |
T |
|
| Q |
101 |
ggatgcctcatgagctctgataaagcccactccacaactgttgcggaagtttcaaatgccccggcaatcatgtctagggatatagcctttatgtttgttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43802285 |
ggatgcctcatgagctctgataaagcccactccacaaccgttgcggaagtttcaaatgccccggcaatcatgtctagggatatagcctttatgtttgttc |
43802186 |
T |
|
| Q |
201 |
gatcaacgacatgggttttttcgtcagagagatcgatcggttggtgcatcagtgagagtagaatgtctacgaaatccctatgct |
284 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
43802185 |
gatcaacgacatgggttttttcgtcagagggatcgatcggttggtgcatcagtgagagtagaatgtctacgaagtccttatgct |
43802102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 43812954 - 43812686
Alignment:
| Q |
1 |
aatatccaagtaacttaactttgacaaatcattttcttctactaatttcttcgccccaaccacgttatctagctcttgttggagatttttcatcactctt |
100 |
Q |
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|||||| |||||||||||||||| || |||||| || || |||||||| ||| |||||| || |||| ||||||||||||||||||||||| |||||| |
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| T |
43812954 |
aatatctaagtaacttaactttgccatatcattctcctccactaatttgttcatcccaactacactatccagctcttgttggagatttttcattactctt |
43812855 |
T |
|
| Q |
101 |
ggatgcctcatgagctctgataaagcccactccacaactgttgcggaagtttcaaatgccccggcaatcatgtctagggatatagcctttatgtttgttc |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||| ||||| ||||| ||||||||| |||| |||||||||| || |||||||||||||||||||| |
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| T |
43812854 |
ggatgcctcatgagctcggataaagcccactccacaatggttgcagaagtgtcaaatgccgcggcgatcatgtctaaggctatagcctttatgtttgttc |
43812755 |
T |
|
| Q |
201 |
gatcaacgacatgggttttttcgtcagagagatcgatcggttggtgcatcagtgagagtagaatgtcta |
269 |
Q |
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|||||| ||||||| ||| |||||||||| |||| |||| |||||| ||||||||||||||||||||| |
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| T |
43812754 |
gatcaatgacatggctttgttcgtcagagggatcaatcgtctggtgcgtcagtgagagtagaatgtcta |
43812686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 29944776 - 29944727
Alignment:
| Q |
83 |
agatttttcatcactcttggatgcctcatgagctctgataaagcccactc |
132 |
Q |
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|||||||||||||||||||||||||| | || || |||||||||||||| |
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| T |
29944776 |
agatttttcatcactcttggatgccttaaaagttcggataaagcccactc |
29944727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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