View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_111 (Length: 285)
Name: NF1318_low_111
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_111 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 22933381 - 22933623
Alignment:
| Q |
1 |
atcaatagtttgaggtcaaatgcttctgttcctgctggttattacactgataattcaaccaaacaagatcttaatattaaaagtgggaaaccaattcttg |
100 |
Q |
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| T |
22933381 |
atcaatagtttgaggtcaaatgcttctgttactgctggttattacactgataattcaaccaaacaagatcttaatattaaaagtgggaaaccaattcttg |
22933480 |
T |
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| Q |
101 |
tttgggttgattatgattcttcattgaatcttattagtgttacactttctccaacttcaactaaaccgaaaaaaccgatcttgtcctttcatgtggatct |
200 |
Q |
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| T |
22933481 |
tttgggttgattatgattcttcattgaatcttattagtgttacactttctccaacttcaattaaaccgaaaaaaccgatcttgtcctttcatgtggatct |
22933580 |
T |
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| Q |
201 |
atctcctatttttcatgatactatgtatgttggtttctctgct |
243 |
Q |
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| T |
22933581 |
atctcctatttttcatgatactatgtatgttggtttctctgct |
22933623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 75 - 243
Target Start/End: Complemental strand, 22922136 - 22921968
Alignment:
| Q |
75 |
tattaaaagtgggaaaccaattcttgtttgggttgattatgattcttcattgaatcttattagtgttacactttctccaacttcaactaaaccgaaaaaa |
174 |
Q |
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| T |
22922136 |
tattaaaggtggaaaaccaattttagtttgggttgattatgattcttcattggaacttattagtgttacactttcaccaacttctaataagcctaaaaaa |
22922037 |
T |
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| Q |
175 |
ccgatcttgtcctttcatgtggatctatctcctatttttcatgatactatgtatgttggtttctctgct |
243 |
Q |
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| T |
22922036 |
cctattttgacttttcatatggatctatcacctctttttcttgatactatgtatgttggtttctctgct |
22921968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 62 - 242
Target Start/End: Complemental strand, 15628227 - 15628047
Alignment:
| Q |
62 |
aacaagatcttaatattaaaagtgggaaaccaattcttgtttgggttgattatgattcttcattgaatcttattagtgttacactttctccaacttcaac |
161 |
Q |
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||||| ||||| |||| |||||||||||||||||||| | |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||| |
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| T |
15628227 |
aacaacatcttgatatcaaaagtgggaaaccaattctagcttgggttgattatgattcttcaataaatcttgttagtgttacactttctccaacttcaac |
15628128 |
T |
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| Q |
162 |
taaaccgaaaaaaccgatcttgtcctttcatgtggatctatctcctatttttcatgatactatgtatgttggtttctctgc |
242 |
Q |
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| T |
15628127 |
aaaaccaaaaaaaccaactttgtcctttcataccgatctatcgcctatttttcatgatactatgtatgttggattctctgc |
15628047 |
T |
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