View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1318_low_114 (Length: 283)
Name: NF1318_low_114
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_114 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 28 - 237
Target Start/End: Complemental strand, 3587002 - 3586793
Alignment:
| Q |
28 |
atcataggcagcagctcgaaaagtactgaccttattagtggtgccggccctttcggtgaccatatacaagagaacccacaattttcactcacaatagaaa |
127 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3587002 |
atcatgggcagcagctcgaaaagtactgaccttattagtggtgccggccctttcggtgaccatttacaagagaacccacaattttcactcacaatagaaa |
3586903 |
T |
|
| Q |
128 |
atgaataaaaatggagtaccaaaagtaccgcatataacctccatcttcacgctccagaagataacacttgaaatttgaacttgaaacttcaactacatgt |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3586902 |
atgaataaaaatggagtaccaaaagtaccgtatataacctccatcttcacgctccagaagataacacttgaaatttgaacttgaaacttcaactacatgt |
3586803 |
T |
|
| Q |
228 |
agtgaaactt |
237 |
Q |
| |
|
|||||||||| |
|
|
| T |
3586802 |
agtgaaactt |
3586793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 3574547 - 3574501
Alignment:
| Q |
89 |
atatacaagagaacccacaattttcactcacaatagaaaatgaataa |
135 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
3574547 |
atatacaagagaacccacgattttcactcacaataaaaaatgaataa |
3574501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 157
Target Start/End: Original strand, 21979083 - 21979138
Alignment:
| Q |
103 |
ccacaattttcactcacaatagaa-aatgaataaaaatggagtaccaaaagtaccg |
157 |
Q |
| |
|
||||| ||| |||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
21979083 |
ccacattttccactcacaatagaataatgagcaaaaatggagtaccaaaagtaccg |
21979138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 147
Target Start/End: Complemental strand, 28080420 - 28080376
Alignment:
| Q |
104 |
cacaattttcactcacaatagaa-aatgaataaaaatggagtacc |
147 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||| |||||| |
|
|
| T |
28080420 |
cacaattttcactcacaatagaataatgaacaaaaatgaagtacc |
28080376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University