View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_115 (Length: 282)
Name: NF1318_low_115
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_115 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 53 - 282
Target Start/End: Original strand, 35831027 - 35831254
Alignment:
| Q |
53 |
gatgaagctgatgtcatgaatcaggtaagacacgccaataatcttattccgtgtatgtttggattgatggtgagtttgatgaaattacggtgacactgtg |
152 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
35831027 |
gatgaagctgatgtcatgaatcaggtaagacacgccaataatcttattccgtgtatgtttggattgatggtgagt--gacgaaattacggtgacactgtg |
35831124 |
T |
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| Q |
153 |
attttgtagaagctctaaagtgtannnnnnnccgaaataaattgtggtggcccgccgtgatttcctcattctcaccgtcaatccaaatatgcactcaatc |
252 |
Q |
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| T |
35831125 |
attttgtagaagctctaaagtgtatttttttccgaaataaattgtggtggcccgccgtgatttcctcattctcaccgtcaatccaaatatgcactcaatc |
35831224 |
T |
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| Q |
253 |
tcatattcaggtttacagcattagttctgt |
282 |
Q |
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| T |
35831225 |
tcatattcaggtttacagcattagttctgt |
35831254 |
T |
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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 18898593 - 18898657
Alignment:
| Q |
107 |
atgtttggattgatggtgagtttgatgaaattacggtgacactgtgattttgtagaagctctaaa |
171 |
Q |
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| T |
18898593 |
atgtttggattgacggtgagcttgatgaaatcacggtgacaccttgattttgttgaagctctaaa |
18898657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 7873062 - 7873116
Alignment:
| Q |
122 |
gtgagtttgatgaaattacggtgacactgtgattttgtagaagctctaaagtgta |
176 |
Q |
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| T |
7873062 |
gtgagtttgataaaattacggtgacaccatgattttgttgaagctataaaatgta |
7873116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 34583692 - 34583745
Alignment:
| Q |
123 |
tgagtttgatgaaattacggtgacactgtgattttgtagaagctctaaagtgta |
176 |
Q |
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| T |
34583692 |
tgagtttgatgtaattacggtgacatcgtgatttcgttgaagttctaaagtgta |
34583745 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 31464765 - 31464818
Alignment:
| Q |
123 |
tgagtttgatgaaattacggtgacactgtgattttgtagaagctctaaagtgta |
176 |
Q |
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| T |
31464765 |
tgagtttgatgaaatcacggtgacacggtgattttgttgaagttctaaagtgta |
31464818 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 39553896 - 39553843
Alignment:
| Q |
106 |
tatgtttggattgatggtgagtttgatgaaattacggtgacactgtgattttgt |
159 |
Q |
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| T |
39553896 |
tatgtttggattgacagtgagtttggtaaaatcacggtgacactgtgattttgt |
39553843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 176
Target Start/End: Complemental strand, 39279781 - 39279726
Alignment:
| Q |
121 |
ggtgagtttgatgaaattacggtgacactgtgattttgtagaagctctaaagtgta |
176 |
Q |
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| T |
39279781 |
ggtgattttgacgaaatcacggtgacacggtgattttgttgaagttctaaagtgta |
39279726 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 19413254 - 19413310
Alignment:
| Q |
103 |
gtgtatgtttggattgatggtgagtttgatgaaattacggtgacactgtgattttgt |
159 |
Q |
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|||| |||||||| | ||||||||| ||| ||||| ||||||||||||||||||||| |
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| T |
19413254 |
gtgtctgtttggaatcatggtgagtgtgacgaaatcacggtgacactgtgattttgt |
19413310 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 176
Target Start/End: Original strand, 6020624 - 6020691
Alignment:
| Q |
109 |
gtttggattgatggtgagtttgatgaaattacggtgacactgtgattttgtagaagctctaaagtgta |
176 |
Q |
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| T |
6020624 |
gtttggattggtggttagtctgacaaaattacggtgccaccatgattttgttgaagctctaaagtgta |
6020691 |
T |
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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 176
Target Start/End: Original strand, 6021815 - 6021881
Alignment:
| Q |
110 |
tttggattgatggtgagtttgatgaaattacggtgacactgtgattttgtagaagctctaaagtgta |
176 |
Q |
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||||||||| |||||||||||| ||||||| ||| ||| |||||| || |||||||||||||||| |
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| T |
6021815 |
tttggattgttggtgagtttgacaaaattaccgtgccaccatgatttggttgaagctctaaagtgta |
6021881 |
T |
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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 6019552 - 6019621
Alignment:
| Q |
107 |
atgtttggattgatggtgagtttgatgaaattacggtgacactgtgattttgtagaagctctaaagtgta |
176 |
Q |
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| T |
6019552 |
atgtttggattgatggtgagttggacgaaatcgtggtgacaacgtgattttgttgaagttataaagtgta |
6019621 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 27871012 - 27870950
Alignment:
| Q |
97 |
tattccgtgtatgtttggattgatggtgagtttgatgaaattacggtgacactgtgattttgt |
159 |
Q |
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||||| |||||||||||||| | |||||||||||| |||| |||||||||| ||||||||| |
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| T |
27871012 |
tattcggtgtatgtttggatgaaaggtgagtttgataaaatcacggtgacaccatgattttgt |
27870950 |
T |
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