View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_117 (Length: 276)
Name: NF1318_low_117
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_117 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 47453384 - 47453622
Alignment:
| Q |
9 |
accacagaataaaaccagattttgtttgtactattagagctctcattaagaccaaacaaaactcgatatctgaaatacattagtgtatgctaactgggac |
108 |
Q |
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| T |
47453384 |
accacagaataaaaccagattttgtttgtactattagagctctcattaagaccaaacaaaactcaatatctgaaatacattagtgtatgctaactgggac |
47453483 |
T |
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| Q |
109 |
ctgggaatgattgaaggaaacaggtatgggggtatcctggttgtcatgtcggtctttagatgagttaaagaatgccagactaatccccacgatgtggccg |
208 |
Q |
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| T |
47453484 |
ctgggaatgattgaaggaaacaggtatgggggtatcctggttgtcatgtcggtctttagatgagttaaagaatgccagactaacccccacgatgtggccg |
47453583 |
T |
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| Q |
209 |
cccattgaccaaactaatcttgtttatttccatctattc |
247 |
Q |
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| T |
47453584 |
cccattgaccaaactaatcttgtttatttccatctattc |
47453622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 241
Target Start/End: Original strand, 47450153 - 47450221
Alignment:
| Q |
173 |
ttaaagaatgccagactaatccccacgatgtggccgcccattgaccaaactaatcttgtttatttccat |
241 |
Q |
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| T |
47450153 |
ttaaagaatgttagactaatccccacgatgtggctgtccatggaccaatttaatcttgtttatttccat |
47450221 |
T |
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