View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1318_low_12 (Length: 639)
Name: NF1318_low_12
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_12 |
 | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-113; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 364 - 626
Target Start/End: Complemental strand, 31043753 - 31043489
Alignment:
| Q |
364 |
ataacttatatattatagtctataatttcttttttactctaatacata---tttttagacacannnnnnnnacaggtttacggaataaacattataatca |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31043753 |
ataacttatatattatagtctataatttcttttttactctaatacataatatttttagacacattttttttacaggtttacggaataaacattataatca |
31043654 |
T |
|
| Q |
461 |
ctattaatacatttgtattaaattactgaatctttcacaatttattcatataaataaatacatttaattgaagtgtgtaaaaattacatcataattaatc |
560 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31043653 |
ctattaatacatttgtattaaattactgaatctttcacaatttattcatataaataaatacatttaattgaagtgt-taaaaattacatcataattaatc |
31043555 |
T |
|
| Q |
561 |
aagaaaatcacagttgctaaatcactaaacaatactacaacactatctacttcaaatcaggtgtct |
626 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||| |
|
|
| T |
31043554 |
aagaaaatcacagttgctaaatcactaaacaatactacgacattatctgcttcaaatcaggtgtct |
31043489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 69 - 305
Target Start/End: Complemental strand, 31048094 - 31047859
Alignment:
| Q |
69 |
aataagtgaatagctttgtataaaactaataaatatttcagagtagatttatatcttaaataaatcagcaaaacaaaagtggattaaaacattacaaact |
168 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
31048094 |
aataagtgaatacctttgtataaaactaagaaatatttcagaatagatttatatcttaaataaataagcaaaacaaaagtggattaaaaaattacaaact |
31047995 |
T |
|
| Q |
169 |
taaataatcaagatcagnnnnnnntagttttttcttgtgttaaatggagttattaacatggatacgaaattgaagaactttgaaggagttctatgaaaac |
268 |
Q |
| |
|
|||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
31047994 |
taaataatcaagattagaaaaaa-tagttttttcttgggttaaatggagttattaacatggatacgaaattgaaggactttgaaggggttctatgaaaac |
31047896 |
T |
|
| Q |
269 |
taagacatatgatttacaagcctttataagatccaat |
305 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31047895 |
taagacatatgatttacaagcctttatcagatccaat |
31047859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 444 - 628
Target Start/End: Complemental strand, 31046569 - 31046385
Alignment:
| Q |
444 |
aataaacattataatcactattaatacatttgtattaaattactgaatctttcacaatttattcatataaataaatacatttaattgaagtgtgtaaaaa |
543 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
31046569 |
aataaacattataatcactactgatacatttgtattaaattactgaatctttcacaatttatccatataaataaatacattaaattgaagtatgtaaaaa |
31046470 |
T |
|
| Q |
544 |
ttacatcataattaatcaagaaaatcacagttgctaaatcactaaacaatactacaacactatctacttcaaatcaggtgtctct |
628 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||| ||||| ||||||||||||||| | | | ||| || |||||||||||||||| |
|
|
| T |
31046469 |
ttacatgataattaatcaagaaaatcacaattgttaaataactaaacaatactacgatattgtctgctccaaatcaggtgtctct |
31046385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 69 - 181
Target Start/End: Complemental strand, 31040429 - 31040317
Alignment:
| Q |
69 |
aataagtgaatagctttgtataaaactaataaatatttcagagtagatttatatcttaaataaatcagcaaaacaaaagtggattaaaacattacaaact |
168 |
Q |
| |
|
|||||||||| | ||| |||||||| ||||||| ||| ||| |||||||||||||| ||||||| |||||||||||||| ||||||| |||||||||| |
|
|
| T |
31040429 |
aataagtgaacacatttctataaaaccaataaatcttttagaatagatttatatcttgaataaatacgcaaaacaaaagtgtattaaaaaattacaaact |
31040330 |
T |
|
| Q |
169 |
taaataatcaaga |
181 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
31040329 |
taattaatcaaga |
31040317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 317 - 364
Target Start/End: Original strand, 31047026 - 31047073
Alignment:
| Q |
317 |
atcttggatttcttttttaaaattgaacgaaactgaacatcatacata |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31047026 |
atcttggatttcttttttaaaattgaacgaaactgaacatcatacata |
31047073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 31050999 - 31050943
Alignment:
| Q |
69 |
aataagtgaatagctttgtataaaactaataaatatttcagagtagatttatatctt |
125 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
31050999 |
aataagtgaatacttttgtataaaactaataaatattttagaatagatttatatctt |
31050943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 31050366 - 31050321
Alignment:
| Q |
136 |
gcaaaacaaaagtggattaaaacattacaaacttaaataatcaaga |
181 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||| ||||||||| |
|
|
| T |
31050366 |
gcaaaacaaaagtgtattaaaaaattacaaacttaattaatcaaga |
31050321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 465 - 594
Target Start/End: Complemental strand, 31016098 - 31015975
Alignment:
| Q |
465 |
taatacatttgtattaaattactgaatctttcacaatttattcatataaataaatacatttaattgaagtgtgtaaaaattacatcataattaatcaaga |
564 |
Q |
| |
|
||||||||| |||||||| ||| |||||||||| ||||||||||||||| ||||||| |||||| | | || ||||||||| ||| ||||||||| |
|
|
| T |
31016098 |
taatacattcgtattaaactacaaaatctttcactttttattcatataaatgaatacat---attgaaatatttataaattacat--taa-taatcaaga |
31016005 |
T |
|
| Q |
565 |
aaatcacagttgctaaatcactaaacaata |
594 |
Q |
| |
|
||||||| ||| ||||| || |||||||| |
|
|
| T |
31016004 |
taatcacaattgttaaattacaaaacaata |
31015975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 119 - 181
Target Start/End: Complemental strand, 31024379 - 31024317
Alignment:
| Q |
119 |
atatcttaaataaatcagcaaaacaaaagtggattaaaacattacaaacttaaataatcaaga |
181 |
Q |
| |
|
||||||||| ||||| |||||||||||||| ||||||| | ||| ||||||| ||||||||| |
|
|
| T |
31024379 |
atatcttaagtaaatacgcaaaacaaaagtgtattaaaaaagtactaacttaattaatcaaga |
31024317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 423
Target Start/End: Complemental strand, 31046639 - 31046582
Alignment:
| Q |
366 |
aacttatatattatagtctataatttcttttttactctaatacatatttttagacaca |
423 |
Q |
| |
|
|||||||||| | ||| ||||||||||||||| ||||||| |||| |||||| ||||| |
|
|
| T |
31046639 |
aacttatataatctagcctataatttctttttaactctaacacatttttttacacaca |
31046582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 31048338 - 31048305
Alignment:
| Q |
37 |
caaaagtggttcaatcgggtcaagatgtatacaa |
70 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
31048338 |
caaaagtggttcaatcgggtcaagatgtacacaa |
31048305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 474 - 572
Target Start/End: Original strand, 162229 - 162327
Alignment:
| Q |
474 |
tgtattaaattactgaatctttcacaatttattcatataaataaatacatttaattgaagtgtgtaaaaattacatcataattaatcaagaaaatcaca |
572 |
Q |
| |
|
||||||| | || ||||||||||||||| ||||||||||||||||||||| | ||| | |||| | ||||||||||||||||||||||||||||| |
|
|
| T |
162229 |
tgtattacactattgaatctttcacaatctattcatataaataaatacataaatcagaatagggtaacatttacatcataattaatcaagaaaatcaca |
162327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University