View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_121 (Length: 270)
Name: NF1318_low_121
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_121 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 27445917 - 27445691
Alignment:
| Q |
1 |
tccttgatggattctgtggttgtgttttgggctattatttcataagagagaaaggccaatgagatgtcacatggtattgtttcatgattatctaattata |
100 |
Q |
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| T |
27445917 |
tccttgatggattctgtggttgtgttttgggctattatttcataagagagaaaggccaatgagatgtcacatggtattgtttcatgattgtctaattata |
27445818 |
T |
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| Q |
101 |
tccaggatt-acttcagacttgaaaactcaggccaaccgatatgctaataatcccactcttctagcagacaagctcaaaacatatcacatagctacgtca |
199 |
Q |
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| T |
27445817 |
tccaggatttacttcagacttgaaaactcaggccaaccgatatgctaataatcccactcttctagcagacaagctcaaaacatatcacatagctacgtca |
27445718 |
T |
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| Q |
200 |
aattatcgttaaacaaccagaacatca |
226 |
Q |
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| T |
27445717 |
aactatcgttaaacaaccagaacatca |
27445691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 136
Target Start/End: Original strand, 27559621 - 27559734
Alignment:
| Q |
24 |
gttttgggctattatttcataagagagaaaggccaatgagatgtcacatggta-ttgtttcatgattatctaattatatccaggattacttcagacttga |
122 |
Q |
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| T |
27559621 |
gttttgggctattatttgataagagataagggccaatgagaggtcacatggtatttttttcatggttttttaattatataaagggttacttcagacttaa |
27559720 |
T |
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| Q |
123 |
aaactcaggccaac |
136 |
Q |
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| T |
27559721 |
aaactcatgccaac |
27559734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 10397491 - 10397371
Alignment:
| Q |
15 |
tgtggttgtgttttgggctattatttcataagagagaaaggccaatgagatgtcacatggtattgtttcatgattatctaattatatccaggattacttc |
114 |
Q |
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| T |
10397491 |
tgtggttgtgttgctggctattatttgataagagataagggccaatgagaagtcatgtggtattatttaatgattgtttaattatatcaacgattacggc |
10397392 |
T |
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| Q |
115 |
agacttgaaaactcaggccaa |
135 |
Q |
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| T |
10397391 |
agactataaaactcatgccaa |
10397371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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