View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_123 (Length: 268)
Name: NF1318_low_123
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_123 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 27 - 222
Target Start/End: Complemental strand, 16723367 - 16723172
Alignment:
| Q |
27 |
caaaggcgggtaaaaatgcataccaggggataaacctcttcgatggatgttccaggctttatagatacacccggcctcatgccgtgtgacttaatatttt |
126 |
Q |
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| T |
16723367 |
caaaagcgggtaaaaatgcataccaggggataaacctcttcgacggatgttccaggctttatagatacacccggcctcatgccgtgtgacttaatatttt |
16723268 |
T |
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| Q |
127 |
ggataagttctttccagttgtctgccaacaaaaatcactttcatgaaagtaatataaaatgtgggcagaagaaagagagaaaaaatacgagaaaac |
222 |
Q |
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| T |
16723267 |
ggataagttctttccagttgtctgccaacaaaaatcactttcatgaaagtaatataaaatgtgggcagaagaaagagagaaaaaatacgagaaaac |
16723172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 38 - 175
Target Start/End: Complemental strand, 10695469 - 10695332
Alignment:
| Q |
38 |
aaaaatgcataccaggggataaacctcttcgatggatgttccaggctttatagatacacccggcctcatgccgtgtgacttaatattttggataagttct |
137 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
10695469 |
aaaaatgcataccaggggataaacctcttcgacggatgttccaggctttatcgatacaccaggcctcatgccgtgtgacttaatattttggataagttct |
10695370 |
T |
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| Q |
138 |
ttccagttgtctgccaacaaaaatcactttcatgaaag |
175 |
Q |
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| T |
10695369 |
ttccagttgtctgccaacaaaaattactttcaagaaag |
10695332 |
T |
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