View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_125 (Length: 267)
Name: NF1318_low_125
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_125 |
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| [»] scaffold0176 (1 HSPs) |
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Alignment Details
Target: scaffold0176 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 48 - 238
Target Start/End: Original strand, 32489 - 32679
Alignment:
| Q |
48 |
aacatgatgattttcctcctttttgaaatatgttgtttgtcacatgtgcccattgaaatatgttagtatttgtgatgaggactaaaaattattttctaaa |
147 |
Q |
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| T |
32489 |
aacatgatgattttcctcctttttgaaatatgtagtttgtcacatgtgcccattgaaatatgttagtatttgtgacgaggactaaaaattattttctaaa |
32588 |
T |
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| Q |
148 |
gatagagacgaaaaacttatttaactacgtagtctttgattgtgttaaaactaaatatatgattgttttatgtatatacagattgtgcccc |
238 |
Q |
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| T |
32589 |
gatagagacgaaaaacttatttaaccacgtagtctttgattgtgttaaaactaaatatatgattattttatgtatatacagattgtgcccc |
32679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 48 - 238
Target Start/End: Original strand, 34165668 - 34165858
Alignment:
| Q |
48 |
aacatgatgattttcctcctttttgaaatatgttgtttgtcacatgtgcccattgaaatatgttagtatttgtgatgaggactaaaaattattttctaaa |
147 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34165668 |
aacatgatgattttcctcctttttgaaatatgtagtttgtcacatgtgcccattgaaatatgttagtatttgtgacgaggactaaaaattattttctaaa |
34165767 |
T |
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| Q |
148 |
gatagagacgaaaaacttatttaactacgtagtctttgattgtgttaaaactaaatatatgattgttttatgtatatacagattgtgcccc |
238 |
Q |
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| T |
34165768 |
gatagagacgaaaaacttatttaaccacgtagtctttgattgtgttaaaactaaatatatgattattttatgtatatacagattgtgcccc |
34165858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 48 - 238
Target Start/End: Original strand, 34215762 - 34215952
Alignment:
| Q |
48 |
aacatgatgattttcctcctttttgaaatatgttgtttgtcacatgtgcccattgaaatatgttagtatttgtgatgaggactaaaaattattttctaaa |
147 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34215762 |
aacatgatgattttcctcctttttgaaatatgtagtttgtcacatgtgcccattgaaatatgttagtatttgtgacgaggactaaaaattattttctaaa |
34215861 |
T |
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| Q |
148 |
gatagagacgaaaaacttatttaactacgtagtctttgattgtgttaaaactaaatatatgattgttttatgtatatacagattgtgcccc |
238 |
Q |
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| T |
34215862 |
gatagagacgaaaaacttatttaaccacgtagtctttgattgtgttaaaactaaatatatgattattttatgtatatacagattgtgcccc |
34215952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 48 - 135
Target Start/End: Original strand, 34172165 - 34172252
Alignment:
| Q |
48 |
aacatgatgattttcctcctttttgaaatatgttgtttgtcacatgtgcccattgaaatatgttagtatttgtgatgaggactaaaaa |
135 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34172165 |
aacatgatgattttcctcctttttgaaatatgtagtttgtcacatgtgcccattgaaatatgttagtatttgtgacgaggactaaaaa |
34172252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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