View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_13 (Length: 638)
Name: NF1318_low_13
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 511; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 29 - 622
Target Start/End: Complemental strand, 47053685 - 47053088
Alignment:
| Q |
29 |
aaaaactccctagaatctaatctcttatattttgaacatcaaaacatagacatgtgacgacgtcgccccatgttttcatctcaaaaacttgcatattaaa |
128 |
Q |
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| T |
47053685 |
aaaaactccctagaatctaatctcttatattttgaacatcaaaacatagacatgtgacgacgtcgccccatgttttcatctcaaaaacttgcatattaaa |
47053586 |
T |
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| Q |
129 |
agtacnnnnnnnn--ttaaaatgcatcatatttctttaagtttccactttatgaagatgtatttggctaattggccaataccttccgaataaaataattn |
226 |
Q |
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| T |
47053585 |
agtacaaaaaaaaaattaaaatgcatcatatttcttaaagtttccactttatgaagatgtatttggctaattggccaataccttccgaataaaataatta |
47053486 |
T |
|
| Q |
227 |
nnnnnngctaaatcatttgacgtgatatctaattttccctagtgacaaaccatcatatataactgaaaatcagtgataaaaattatctgcaagcaaggga |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47053485 |
aaaaaagctaaatcatttgacgtgatatctaattttccctagtgacaaaccattatatataactgaaaatcagtgataaaaattatctgcaagcaaggga |
47053386 |
T |
|
| Q |
327 |
gtgagaaactatcaaaaccaacagtgaagttgtgtctgaattcttgtttcagtttgcattgtat--tagtccaaaatgattgtgcgattgggatccctag |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
47053385 |
gtgagaaactatcaaaaccaacagtgaagttgtgtctgaattcttgtttcagtttgcattgtatagtagtccaaaatgattgtgcgattgggatccctag |
47053286 |
T |
|
| Q |
425 |
tgattttggtgatgactttggcagttgaagcccaactgaaaagtgggttttaatcaaatccatgtccaacagctgagcccatcgtacggtccacagttgt |
524 |
Q |
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| T |
47053285 |
tgattttggtgatgactttggcagttgaagcccaactgaaaagtgggttttaatcaaattcatgtccaacagctgcgcccatcttacggtccacagttgt |
47053186 |
T |
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| Q |
525 |
atcttactttaacaaagatccaaccattgatccaggcctgctcaggtttcatttccatgattgctttgtccaagtaagctaagtgtatgtttgtttgg |
622 |
Q |
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| T |
47053185 |
atcttactttaacaaagatccaaccattgatccaggcctgctcaggtttcatttccatgattgctttgtccaagtaagctaagtgtatgtttgtttgg |
47053088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 248 - 614
Target Start/End: Complemental strand, 47050334 - 47049963
Alignment:
| Q |
248 |
gtgatatctaattttccctagtgacaaaccatcatatataactgaaaatca---gtgataaaaattatctgcaagcaagggagtgaga-aactatcaaaa |
343 |
Q |
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|||||||||| |||| ||| || ||||||| |||||||||||| ||||| |||| | |||| ||||| ||||||||||||||| ||| || |||| |
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| T |
47050334 |
gtgatatctactttttgctacagagaaaccattatatataactgacaatcactagtgacacaaatgctctgctagcaagggagtgagagaaccataaaaa |
47050235 |
T |
|
| Q |
344 |
-ccaacagtgaagttgtgtctgaattcttgtttcagtttgcattgtattagtccaaaatgattgtgcgattgggatccctagtgattttggtgatgactt |
442 |
Q |
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| T |
47050234 |
accaagtgtggagttgtatctgaatacttgtttcagtttgcattgtgttcgtacaaaatgattgtgaaattgggcttcttggtgattttggggatgactt |
47050135 |
T |
|
| Q |
443 |
tggcagttgaagcccaactgaaaagtgggttttaatcaaatccatgtccaacagctgagcccatcgtacggtccacagttgtatcttactttaacaaaga |
542 |
Q |
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| T |
47050134 |
tggcagtaaatgcccaactgaaaactgggttttattcaaattcatgtccaacagctgagtccatcgtacggtccacagttgtatcttactttaacaaaga |
47050035 |
T |
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| Q |
543 |
tccaaccattgatccaggcctgctcaggtttcatttccatgattgctttgtccaagtaagctaagtgtatgt |
614 |
Q |
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| T |
47050034 |
tccaaccattgctcctggcctgctcagacttcatttccatgattgctttgtccaagtaagctaattgtatgt |
47049963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 47050425 - 47050389
Alignment:
| Q |
169 |
tccactttatgaagatgtatttggctaattggccaat |
205 |
Q |
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|||||| |||||| ||||||||||||||||||||||| |
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| T |
47050425 |
tccactatatgaaaatgtatttggctaattggccaat |
47050389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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