View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1318_low_130 (Length: 260)

Name: NF1318_low_130
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1318_low_130
NF1318_low_130
[»] chr1 (2 HSPs)
chr1 (39-116)||(3675212-3675289)
chr1 (170-242)||(3675343-3675415)
[»] chr3 (1 HSPs)
chr3 (170-232)||(48553395-48553457)


Alignment Details
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 39 - 116
Target Start/End: Original strand, 3675212 - 3675289
Alignment:
Q  39 actttgagtgagtttatgtaccaaaaatgataagtcctaatgattatttagtatctacttaatttaattttgtgcctt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3675212 actttgagtgagtttatgtaccaaaaatgataagtcctaatgattatttagtatctacttaatttaattttgtgcctt 3675289  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 3675343 - 3675415
Alignment:
Q  170 catacttctgaatagttgattctccaagctacctcttggcatgtattcatacaccaaaagcctgtgttcatct 242  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3675343 catacttctgaataattgattctccaagctacctcttggcatgtattcatacaccaaaagcctgtgttcatct 3675415  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 48553457 - 48553395
Alignment:
Q  170 catacttctgaatagttgattctccaagctacctcttggcatgtattcatacaccaaaagcct 232  Q
    |||||||||||| | |||||| |||||||| ||||||| ||||||||||||||||||||||||    
T  48553457 catacttctgaacaattgattttccaagctccctcttgtcatgtattcatacaccaaaagcct 48553395  T

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