View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1318_low_136 (Length: 253)

Name: NF1318_low_136
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1318_low_136
NF1318_low_136
[»] chr8 (16 HSPs)
chr8 (1-241)||(5836425-5836663)
chr8 (65-194)||(5884382-5884511)
chr8 (65-157)||(31449429-31449522)
chr8 (117-196)||(17953570-17953648)
chr8 (65-168)||(44925463-44925566)
chr8 (105-156)||(17020812-17020863)
chr8 (103-154)||(17026390-17026441)
chr8 (105-156)||(17551249-17551300)
chr8 (103-154)||(17556882-17556933)
chr8 (103-154)||(40125477-40125528)
chr8 (118-170)||(1910551-1910603)
chr8 (108-187)||(7002084-7002161)
chr8 (108-156)||(13799457-13799505)
chr8 (65-168)||(15951093-15951197)
chr8 (105-169)||(18875971-18876035)
chr8 (111-155)||(33417010-33417054)
[»] chr7 (6 HSPs)
chr7 (66-154)||(3880443-3880532)
chr7 (105-196)||(8268717-8268807)
chr7 (105-169)||(16372845-16372910)
chr7 (118-196)||(4579921-4579998)
chr7 (105-155)||(4930684-4930734)
chr7 (105-170)||(25831990-25832055)
[»] chr3 (20 HSPs)
chr3 (105-169)||(48431940-48432004)
chr3 (105-187)||(20168819-20168899)
chr3 (105-168)||(757948-758011)
chr3 (66-168)||(29350691-29350793)
chr3 (64-157)||(8888367-8888461)
chr3 (104-149)||(1640522-1640567)
chr3 (111-187)||(17025691-17025765)
chr3 (69-168)||(18467676-18467775)
chr3 (104-155)||(4662572-4662623)
chr3 (105-168)||(46964460-46964523)
chr3 (105-151)||(12965470-12965516)
chr3 (105-167)||(25726357-25726419)
chr3 (118-168)||(55326227-55326276)
chr3 (65-157)||(3034080-3034173)
chr3 (65-157)||(3693055-3693148)
chr3 (65-157)||(8070115-8070208)
chr3 (111-168)||(18011766-18011823)
chr3 (118-167)||(18472459-18472507)
chr3 (105-169)||(2207329-2207392)
chr3 (105-165)||(35456544-35456604)
[»] chr4 (15 HSPs)
chr4 (65-196)||(19540721-19540852)
chr4 (105-169)||(32081708-32081772)
chr4 (118-168)||(3309609-3309659)
chr4 (105-196)||(19107034-19107123)
chr4 (65-165)||(51698373-51698474)
chr4 (105-169)||(1150949-1151013)
chr4 (65-154)||(48276200-48276291)
chr4 (105-168)||(5927799-5927861)
chr4 (105-168)||(42316212-42316275)
chr4 (105-167)||(8694166-8694227)
chr4 (105-167)||(16421491-16421553)
chr4 (105-170)||(13065384-13065449)
chr4 (105-196)||(31766296-31766385)
chr4 (105-154)||(33468587-33468636)
chr4 (105-196)||(15805222-15805311)
[»] chr5 (12 HSPs)
chr5 (118-194)||(23688521-23688595)
chr5 (65-157)||(36941829-36941922)
chr5 (118-196)||(9726349-9726425)
chr5 (103-154)||(39518861-39518912)
chr5 (103-154)||(39523500-39523551)
chr5 (118-195)||(40148322-40148397)
chr5 (118-168)||(37248397-37248447)
chr5 (65-157)||(36937075-36937168)
chr5 (105-169)||(6513497-6513561)
chr5 (65-168)||(26667725-26667828)
chr5 (65-168)||(26939322-26939425)
chr5 (65-168)||(29167513-29167616)
[»] scaffold0054 (1 HSPs)
scaffold0054 (105-169)||(25904-25968)
[»] chr1 (12 HSPs)
chr1 (65-168)||(16649176-16649279)
chr1 (60-170)||(39200298-39200409)
chr1 (105-167)||(27311369-27311431)
chr1 (105-170)||(2493459-2493524)
chr1 (65-157)||(3094526-3094619)
chr1 (117-196)||(47450820-47450898)
chr1 (105-169)||(19798583-19798647)
chr1 (111-170)||(28434222-28434281)
chr1 (107-149)||(9352950-9352992)
chr1 (105-154)||(16833937-16833986)
chr1 (111-168)||(26927308-26927364)
chr1 (121-196)||(33300844-33300918)
[»] scaffold0002 (2 HSPs)
scaffold0002 (105-168)||(443526-443588)
scaffold0002 (103-154)||(4526-4577)
[»] chr6 (6 HSPs)
chr6 (116-170)||(5856465-5856519)
chr6 (105-170)||(14042036-14042101)
chr6 (105-169)||(11570328-11570392)
chr6 (105-196)||(11559800-11559890)
chr6 (105-169)||(20747884-20747948)
chr6 (112-160)||(32001770-32001818)
[»] chr2 (9 HSPs)
chr2 (105-196)||(31327175-31327264)
chr2 (104-168)||(14104985-14105049)
chr2 (125-187)||(13291135-13291195)
chr2 (105-168)||(17968544-17968606)
chr2 (105-168)||(25477878-25477940)
chr2 (105-168)||(25496906-25496968)
chr2 (103-154)||(29678220-29678271)
chr2 (103-154)||(30651380-30651431)
chr2 (105-154)||(7737445-7737494)
[»] scaffold0352 (1 HSPs)
scaffold0352 (105-168)||(7557-7619)
[»] scaffold0182 (1 HSPs)
scaffold0182 (118-157)||(9499-9538)


Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 5836663 - 5836425
Alignment:
Q  1 cttctacactccgcttgtgttaacgagtaattcagatgtttatcnnnnnnnctttcgtactttagaattaagagtgatcttaaaattatagtccatttta 100  Q
    |||||||||| |||||||||||||||| |||||||||||| |||       ||||||| ||||||||| ||||||||||||||||||||||| |||||||    
T  5836663 cttctacacttcgcttgtgttaacgagcaattcagatgttcatctttttttctttcgtcctttagaatgaagagtgatcttaaaattatagttcatttta 5836564  T
Q  101 tgtaaatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcgaggaataaaaagtattttaatatcatatatt 200  Q
    | ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||  |||||    
T  5836563 tataaatgttcctttgaaattaagaatagtcttaagatcatatttccttcgataatttatgtcccttcgacgaataaaaagtattttaatatc--atatt 5836466  T
Q  201 gattttggaattaagaatgatcttaataatatatatatttt 241  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  5836465 gattttggaattaagaatgatcttaataatatatatctttt 5836425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 65 - 194
Target Start/End: Complemental strand, 5884511 - 5884382
Alignment:
Q  65 gaattaagagtgatcttaaaattatagtccattttatgtaaa-tgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtc 163  Q
    |||||||||||| |||| | |  ||| || |||||||||||| ||| |||| |||  ||||||||||||||||| ||||||| |||||||||||||||||    
T  5884511 gaattaagagtgttctttagacaataatctattttatgtaaaatgtcccttcgaagctaagaatggtcttaagagcatattctcttcgataatttatgtc 5884412  T
Q  164 ccttcgaggaataaaaagta-ttttaatatca 194  Q
    |||||||  |||||| |||| |||||||||||    
T  5884411 ccttcga--aataaagagtacttttaatatca 5884382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 157
Target Start/End: Original strand, 31449429 - 31449522
Alignment:
Q  65 gaattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatt 157  Q
    |||||||||||| |||||| |  ||||||||||||  ||  ||||| |||| | |||||||||||||||||||| |||| ||||||||||||||    
T  31449429 gaattaagagtgttcttaagaccatagtccattttcggtttaatgtcccttcggaattaagaatggtcttaagagcatagtcccttcgataatt 31449522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 196
Target Start/End: Original strand, 17953570 - 17953648
Alignment:
Q  117 aaattaagaatggtcttaagatcatattcccttcgata-atttatgtcccttcgaggaataaaaagtattttaatatcata 196  Q
    ||||||||||||||||||||| |||| |||||||||||  ||||||||||||  | ||||||| | |||||||| ||||||    
T  17953570 aaattaagaatggtcttaagagcatagtcccttcgatatttttatgtccctt--aagaataaataatattttaacatcata 17953648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 168
Target Start/End: Original strand, 44925463 - 44925566
Alignment:
Q  65 gaattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtc 163  Q
    |||||||||||| |||||| |  ||||||||||||  ||  ||||| |||| | |||||||||||||||||| | ||||  |||||||||||| ||||||    
T  44925463 gaattaagagtgttcttaagaccatagtccattttcggttcaatgtcccttcggaattaagaatggtcttaaaa-catagccccttcgataatatatgtc 44925561  T
Q  164 ccttc 168  Q
    |||||    
T  44925562 ccttc 44925566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 156
Target Start/End: Complemental strand, 17020863 - 17020812
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataat 156  Q
    ||||| |||||| |||||||||||||||||| | |||| |||||||||||||    
T  17020863 aatgtccctttggaattaagaatggtcttaaaaacatagtcccttcgataat 17020812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 154
Target Start/End: Complemental strand, 17026441 - 17026390
Alignment:
Q  103 taaatgttcctttgaaattaagaatggtcttaagatcatattcccttcgata 154  Q
    ||||||| |||| | ||||||||||||||||||| ||||| |||||||||||    
T  17026441 taaatgtcccttcggaattaagaatggtcttaagttcatagtcccttcgata 17026390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 156
Target Start/End: Complemental strand, 17551300 - 17551249
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataat 156  Q
    ||||| |||||| |||||||||||||||||| | |||| |||||||||||||    
T  17551300 aatgtccctttggaattaagaatggtcttaaaaacatagtcccttcgataat 17551249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 154
Target Start/End: Complemental strand, 17556933 - 17556882
Alignment:
Q  103 taaatgttcctttgaaattaagaatggtcttaagatcatattcccttcgata 154  Q
    ||||||| |||| | ||||||||||||||||||| ||||| |||||||||||    
T  17556933 taaatgtcccttcggaattaagaatggtcttaagttcatagtcccttcgata 17556882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 154
Target Start/End: Original strand, 40125477 - 40125528
Alignment:
Q  103 taaatgttcctttgaaattaagaatggtcttaagatcatattcccttcgata 154  Q
    ||||||| |||| | ||||||||||||||||||| ||||| |||||||||||    
T  40125477 taaatgtcccttcggaattaagaatggtcttaagttcatagtcccttcgata 40125528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 1910551 - 1910603
Alignment:
Q  118 aattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcga 170  Q
    |||||||||||||||||| | |||| ||| ||||||||| || ||||||||||    
T  1910551 aattaagaatggtcttaaaaacatagtccattcgataatataagtcccttcga 1910603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 187
Target Start/End: Complemental strand, 7002161 - 7002084
Alignment:
Q  108 gttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcgaggaataaaaagtatttt 187  Q
    ||||||| | ||| ||||||| |||||||  |||| |||||| |||||||||||||||||   |||||||||| ||||||    
T  7002161 gttccttcggaatcaagaatgatcttaagggcatagtccctttgataatttatgtccctt--tggaataaaaaatatttt 7002084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 13799457 - 13799505
Alignment:
Q  108 gttcctttgaaattaagaatggtcttaagatcatattcccttcgataat 156  Q
    ||||||| ||||| || ||||||||||||| |||| |||||||||||||    
T  13799457 gttccttcgaaataaaaaatggtcttaagagcatagtcccttcgataat 13799505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 168
Target Start/End: Original strand, 15951093 - 15951197
Alignment:
Q  65 gaattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtc 163  Q
    |||||||||||| |||||| |  ||||||| ||||  ||  ||||| |||| | |||||||||||||||| | | |||| |||||| |||||| ||||||    
T  15951093 gaattaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtctttaaaacatagtccctttgataatatatgtc 15951192  T
Q  164 ccttc 168  Q
    |||||    
T  15951193 ccttc 15951197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 18875971 - 18876035
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcg 169  Q
    ||||| |||| |||||||||||||||||||| | |||| || || ||||||| || |||||||||    
T  18875971 aatgtcccttcgaaattaagaatggtcttaaaaacatagtcactccgataatataagtcccttcg 18876035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 33417054 - 33417010
Alignment:
Q  111 cctttgaaattaagaatggtcttaagatcatattcccttcgataa 155  Q
    |||| |||||||||||||||||||| | |||| ||||||||||||    
T  33417054 ccttcgaaattaagaatggtcttaaaaacatagtcccttcgataa 33417010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 154
Target Start/End: Complemental strand, 3880532 - 3880443
Alignment:
Q  66 aattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgata 154  Q
    ||||||||||| |||||| | |||||||||||||  ||  |||||||||| ||||||| ||||||||||||| ||||| |||||||||||    
T  3880532 aattaagagtgttcttaagactatagtccattttcggtttaatgttccttcgaaattatgaatggtcttaagttcatagtcccttcgata 3880443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 8268807 - 8268717
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcgaggaataaaaagta-ttttaatatcata 196  Q
    ||||| |||| | |||||||||||||||||| | |||| ||| ||||||||| |||||||||||  |||||||| |||| |||||| ||||||    
T  8268807 aatgtcccttcggaattaagaatggtcttaaaaacatagtccattcgataatatatgtcccttc--ggaataaagagtacttttaagatcata 8268717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 16372910 - 16372845
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgata-atttatgtcccttcg 169  Q
    ||||| |||| | |||||||||||||||||||| |||| |||||||||||  ||||||||||||||    
T  16372910 aatgtcccttcggaattaagaatggtcttaagaacatagtcccttcgatatttttatgtcccttcg 16372845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 196
Target Start/End: Complemental strand, 4579998 - 4579921
Alignment:
Q  118 aattaagaatggtcttaagatcatattcccttcgataa-tttatgtcccttcgaggaataaaaagtattttaatatcata 196  Q
    ||||||||||||| |||||| |||| |||||||||||| |||| ||||||||||  |||||| | |||||||| ||||||    
T  4579998 aattaagaatggttttaagagcatagtcccttcgataattttaagtcccttcga--aataaataatattttaagatcata 4579921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 4930734 - 4930684
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataa 155  Q
    ||||| |||| |||||||||||||||||||| | |||| ||||||||||||    
T  4930734 aatgtcccttcgaaattaagaatggtcttaaaaacatagtcccttcgataa 4930684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 25831990 - 25832055
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcga 170  Q
    |||||||||||| |||||||||||||||||| | |||| || ||||  ||| || |||||||||||    
T  25831990 aatgttcctttggaattaagaatggtcttaaaaacatagtcacttcagtaaattttgtcccttcga 25832055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 48431940 - 48432004
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcg 169  Q
    ||||| |||| |||||||||||||||||||||| |||| |||||||||||| || ||||||||||    
T  48431940 aatgtcccttcgaaattaagaatggtcttaagaacatagtcccttcgataaattttgtcccttcg 48432004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 105 - 187
Target Start/End: Original strand, 20168819 - 20168899
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcgaggaataaaaagtatttt 187  Q
    |||||| ||||| |||||||||||||||||||| |||| |  |||  |||||||||||||||||||  |||||||||||||||    
T  20168819 aatgtttctttggaattaagaatggtcttaagaacatagtttctttaataatttatgtcccttcga--aataaaaagtatttt 20168899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 757948 - 758011
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttc 168  Q
    ||||| |||| | |||||||||||||||||| | |||| ||||||||||||| |||||||||||    
T  757948 aatgtcccttcggaattaagaatggtcttaaaaacatagtcccttcgataatatatgtcccttc 758011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 168
Target Start/End: Complemental strand, 29350793 - 29350691
Alignment:
Q  66 aattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcc 164  Q
    ||||||||||| |||||| || ||||||| ||||  ||  ||||| |||||| |||||| ||||||||||| | |||| ||||||||||||| |||||||    
T  29350793 aattaagagtgttcttaagatcatagtcccttttcggtttaatgtccctttggaattaataatggtcttaaaa-catagtcccttcgataatatatgtcc 29350695  T
Q  165 cttc 168  Q
    ||||    
T  29350694 cttc 29350691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 157
Target Start/End: Complemental strand, 8888461 - 8888367
Alignment:
Q  64 agaattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatt 157  Q
    ||||||||||||| |||||| |  ||||||| ||||  ||  ||||| |||| | |||||||||||||||||||| |||| ||||||||||||||    
T  8888461 agaattaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaagagcatagtcccttcgataatt 8888367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 1640522 - 1640567
Alignment:
Q  104 aaatgttcctttgaaattaagaatggtcttaagatcatattccctt 149  Q
    |||||||| || ||||||||||||||||||||||||||| ||||||    
T  1640522 aaatgttcattcgaaattaagaatggtcttaagatcatagtccctt 1640567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 187
Target Start/End: Original strand, 17025691 - 17025765
Alignment:
Q  111 cctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcgaggaataaaaagtatttt 187  Q
    |||| ||||||||||| | |||||||| |||| | ||||||||||| |||||||||||   ||||||||||||||||    
T  17025691 ccttcgaaattaagaaagttcttaagaacatagttccttcgataatatatgtcccttc--agaataaaaagtatttt 17025765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 18467775 - 18467676
Alignment:
Q  69 taagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtccctt 167  Q
    |||||||| |||||| || ||||||| ||||  ||  ||||| |||| | |||||||||||||||||| | |||| ||||||||||||| ||||||||||    
T  18467775 taagagtgttcttaagatcatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaaaa-catagtcccttcgataatatatgtccctt 18467677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 4662623 - 4662572
Alignment:
Q  104 aaatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataa 155  Q
    |||||| |||| | |||||||||||||||||||| |||| ||||||||||||    
T  4662623 aaatgtcccttcggaattaagaatggtcttaagaacatagtcccttcgataa 4662572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 46964523 - 46964460
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttc 168  Q
    ||||| |||||  |||||||||||||||||| | |||| || |||||||||| |||||||||||    
T  46964523 aatgtccctttagaattaagaatggtcttaaaaacatagtctcttcgataatatatgtcccttc 46964460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 12965470 - 12965516
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcg 151  Q
    ||||| |||| ||||||||||||||||||||| ||||| ||||||||    
T  12965470 aatgtcccttcgaaattaagaatggtcttaagttcatagtcccttcg 12965516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 25726357 - 25726419
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtccctt 167  Q
    ||||| |||| ||| |||||||  ||||||||| |||| ||||||||||||| ||||||||||    
T  25726357 aatgtcccttcgaagttaagaaatgtcttaagaacatagtcccttcgataatatatgtccctt 25726419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 168
Target Start/End: Complemental strand, 55326276 - 55326227
Alignment:
Q  118 aattaagaatggtcttaagatcatattcccttcgataatttatgtcccttc 168  Q
    |||||||||||||||||| | |||| ||||||||||||| |||||||||||    
T  55326276 aattaagaatggtcttaaaa-cataatcccttcgataatatatgtcccttc 55326227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 157
Target Start/End: Complemental strand, 3034173 - 3034080
Alignment:
Q  65 gaattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatt 157  Q
    |||||||||||| |||||| |  ||||||| ||||  ||  ||||| |||| | |||||||||||||||||| | |||| ||||||||||||||    
T  3034173 gaattaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaacagcatagtcccttcgataatt 3034080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 157
Target Start/End: Complemental strand, 3693148 - 3693055
Alignment:
Q  65 gaattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatt 157  Q
    |||||||||||| |||||| |  ||||||| ||||  ||  ||||| |||| | |||||||||||||||||| | |||| ||||||||||||||    
T  3693148 gaattaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaacagcatagtcccttcgataatt 3693055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 157
Target Start/End: Complemental strand, 8070208 - 8070115
Alignment:
Q  65 gaattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatt 157  Q
    |||||||||||| |||||| |  ||||||| ||||  ||  ||||| |||| | |||||||||||||||||| | |||| ||||||||||||||    
T  8070208 gaattaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaacagcatagtcccttcgataatt 8070115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 18011823 - 18011766
Alignment:
Q  111 cctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttc 168  Q
    |||| ||||| || ||||||||||| | |||| |||||||||||||||||||| ||||    
T  18011823 ccttcgaaatcaaaaatggtcttaaaaacatagtcccttcgataatttatgtcgcttc 18011766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 18472507 - 18472459
Alignment:
Q  118 aattaagaatggtcttaagatcatattcccttcgataatttatgtccctt 167  Q
    |||||||||||||||||| | |||| ||||||||||||| ||||||||||    
T  18472507 aattaagaatggtcttaaaa-catagtcccttcgataatatatgtccctt 18472459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 2207329 - 2207392
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcg 169  Q
    ||||| |||| |||||||||||||||||||| | |||| ||||||| ||||| |||||| |||||    
T  2207329 aatgtcccttcgaaattaagaatggtcttaa-agcatagtcccttcaataatatatgtctcttcg 2207392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 35456544 - 35456604
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtccc 165  Q
    ||||| |||| | |||||||||||||||||||| |||| || ||| |||| ||||||||||    
T  35456544 aatgtcccttcggaattaagaatggtcttaagagcataatctctttgatagtttatgtccc 35456604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 196
Target Start/End: Original strand, 19540721 - 19540852
Alignment:
Q  65 gaattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtc 163  Q
    |||||||||||| |||||| |  ||||||| ||||  ||  ||||| |||| | |||||||||||||||||| | |||| ||||||||||||| ||||||    
T  19540721 gaattaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaaaaacatagtcccttcgataatatatgtc 19540820  T
Q  164 ccttcgaggaataaaaagta-ttttaatatcata 196  Q
    |||||  |||||||| |||| |||||| ||||||    
T  19540821 ccttc--ggaataaagagtacttttaagatcata 19540852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 32081708 - 32081772
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcg 169  Q
    ||||| |||||| |||||||||||||||||| | |||| ||||||||||||| || |||||||||    
T  32081708 aatgtccctttggaattaagaatggtcttaaaaacatagtcccttcgataatataagtcccttcg 32081772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 168
Target Start/End: Complemental strand, 3309659 - 3309609
Alignment:
Q  118 aattaagaatggtcttaagatcatattcccttcgataatttatgtcccttc 168  Q
    ||||||||||| |||| |||||||| ||||||||||||||||||| |||||    
T  3309659 aattaagaatgatcttcagatcatagtcccttcgataatttatgttccttc 3309609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 19107123 - 19107034
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcgaggaataaaaagta-ttttaatatcata 196  Q
    ||||| |||| |||||||||||||||||||| | |||| ||||||||||||| |||||| ||||  |||||||| |||| |||||| ||||||    
T  19107123 aatgtcccttcgaaattaagaatggtcttaa-aacatagtcccttcgataatatatgtctcttc--ggaataaagagtacttttaagatcata 19107034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 165
Target Start/End: Complemental strand, 51698474 - 51698373
Alignment:
Q  65 gaattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtc 163  Q
    |||||||||||| |||||| |  ||||||| ||||  ||  ||||| |||| | |||||||||||||||||| | |||| ||||||||||||| ||||||    
T  51698474 gaattaagagtgttcttaagacaatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaaaaacatagtcccttcgataatatatgtc 51698375  T
Q  164 cc 165  Q
    ||    
T  51698374 cc 51698373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 1150949 - 1151013
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcg 169  Q
    ||||| |||| | ||||||||||| |||||||| |||| |||||| |||||||||||| ||||||    
T  1150949 aatgtcccttcggaattaagaatgatcttaagagcatagtccctttgataatttatgtaccttcg 1151013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 154
Target Start/End: Original strand, 48276200 - 48276291
Alignment:
Q  65 gaattaagagtgatcttaaaattatagtccattttatgt--aaatgttcctttgaaattaagaatggtcttaagatcatattcccttcgata 154  Q
    |||||||||||| |||||| | |||||||| ||||  ||  | |||| |||||| ||||||||||||||||||  ||||| |||||||||||    
T  48276200 gaattaagagtgttcttaagactatagtcccttttcggtttagatgtccctttggaattaagaatggtcttaaattcatagtcccttcgata 48276291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 5927799 - 5927861
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttc 168  Q
    ||||| |||| | |||||||||||||||||| | |||| ||||||||||||| |||||||||||    
T  5927799 aatgtcccttcggaattaagaatggtcttaaaa-catagtcccttcgataatatatgtcccttc 5927861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 42316212 - 42316275
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttc 168  Q
    ||||| |||| ||||||||||||||||||||||  ||| ||| ||| || ||||||||||||||    
T  42316212 aatgtcccttcgaaattaagaatggtcttaagagtatagtccgttcaattatttatgtcccttc 42316275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 8694227 - 8694166
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtccctt 167  Q
    ||||| |||||| |||||||||||||||||| | |||| ||| ||||||||| ||||||||||    
T  8694227 aatgtccctttggaattaagaatggtcttaa-aacatagtccattcgataatatatgtccctt 8694166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 16421553 - 16421491
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtccctt 167  Q
    ||||| |||| | |||||||||||||||||| | |||| ||||||||||||| || |||||||    
T  16421553 aatgtcccttcggaattaagaatggtcttaaaaacatagtcccttcgataatataagtccctt 16421491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 13065384 - 13065449
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcga 170  Q
    ||||| |||| | ||||||||| |||||||| | ||||  |||||||||||| |||||||||||||    
T  13065384 aatgtcccttcggaattaagaaaggtcttaaaaacatagccccttcgataatgtatgtcccttcga 13065449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 31766385 - 31766296
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcgaggaataaaaagta-ttttaatatcata 196  Q
    ||||| |||| | |||||||||||||||||| | |||| ||||| ||||||| |||||||||||   |||||||||||| |||||| ||||||    
T  31766385 aatgtcccttcggaattaagaatggtcttaa-aacatagtccctgcgataatatatgtcccttc--agaataaaaagtacttttaagatcata 31766296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 33468587 - 33468636
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgata 154  Q
    ||||| |||||  ||||||||||||||||||| ||||| |||||||||||    
T  33468587 aatgtccctttagaattaagaatggtcttaagttcataatcccttcgata 33468636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 196
Target Start/End: Original strand, 15805222 - 15805311
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcgaggaataaaaagtattttaatatcata 196  Q
    ||||| |||| | ||||||||||  |||||| | |||| |||||| ||||||||||| ||||||  |||||||| | |||||||||| ||||    
T  15805222 aatgtcccttcggaattaagaataatcttaatagcatagtccctttgataatttatgccccttc--ggaataaataatattttaataccata 15805311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 23688595 - 23688521
Alignment:
Q  118 aattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcgaggaataaaaagtattttaatatca 194  Q
    |||||||||||||||||||| |||||||| |||||| || |||||||||||  |||||||| | |||||||| ||||    
T  23688595 aattaagaatggtcttaagagcatattcctttcgatgatatatgtcccttc--ggaataaagactattttaagatca 23688521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 157
Target Start/End: Original strand, 36941829 - 36941922
Alignment:
Q  65 gaattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatt 157  Q
    |||||||||||| |||||| || ||||||| ||||  ||  ||||| |||| | |||||||||||||||||| | |||| ||||||||||||||    
T  36941829 gaattaagagtgttcttaagatcatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaacagcatagtcccttcgataatt 36941922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 9726349 - 9726425
Alignment:
Q  118 aattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcgaggaataaaaagta-ttttaatatcata 196  Q
    |||||||||||||||||| | |||| ||||||||||||| |||||||||||  |||||||| |||| |||||| ||||||    
T  9726349 aattaagaatggtcttaaaa-catagtcccttcgataatatatgtcccttc--ggaataaagagtacttttaagatcata 9726425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 154
Target Start/End: Complemental strand, 39518912 - 39518861
Alignment:
Q  103 taaatgttcctttgaaattaagaatggtcttaagatcatattcccttcgata 154  Q
    ||||||| |||| | ||||||||||||||||||| ||||| |||||||||||    
T  39518912 taaatgtcccttcggaattaagaatggtcttaagttcatagtcccttcgata 39518861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 154
Target Start/End: Complemental strand, 39523551 - 39523500
Alignment:
Q  103 taaatgttcctttgaaattaagaatggtcttaagatcatattcccttcgata 154  Q
    ||||||| |||| | ||||||||||||||||||| ||||| |||||||||||    
T  39523551 taaatgtcccttcggaattaagaatggtcttaagttcatagtcccttcgata 39523500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 195
Target Start/End: Complemental strand, 40148397 - 40148322
Alignment:
Q  118 aattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcgaggaataaaaagta-ttttaatatcat 195  Q
    |||||||||||||||||| | |||| ||||||||||||| |||||||||||   |||||||||||| |||||| |||||    
T  40148397 aattaagaatggtcttaaaa-catagtcccttcgataatatatgtcccttc--agaataaaaagtacttttaagatcat 40148322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 168
Target Start/End: Original strand, 37248397 - 37248447
Alignment:
Q  118 aattaagaatggtcttaagatcatattcccttcgataatttatgtcccttc 168  Q
    ||||||||||| |||||| | |||| ||||||||||||| |||||||||||    
T  37248397 aattaagaatgatcttaaaaacatagtcccttcgataatatatgtcccttc 37248447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 157
Target Start/End: Original strand, 36937075 - 36937168
Alignment:
Q  65 gaattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatt 157  Q
    ||||||||||| ||||||| |  ||||||| ||||  ||  ||||| |||| | |||||||||||||||||| | |||| ||||||||||||||    
T  36937075 gaattaagagtaatcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaacagcatagtcccttcgataatt 36937168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 6513497 - 6513561
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcg 169  Q
    ||||| |||| ||||||||||||| |||||| | |||| ||||| ||||||| || |||||||||    
T  6513497 aatgtcccttcgaaattaagaatgatcttaaaaacatagtccctccgataatataagtcccttcg 6513561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 168
Target Start/End: Complemental strand, 26667828 - 26667725
Alignment:
Q  65 gaattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtc 163  Q
    |||||||||||| |||||| |  ||||||| ||||  ||  ||||| |||| | |||||||||||||||||| | |||| |||||| |||||| ||||||    
T  26667828 gaattaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaa-aacatagtccctttgataatatatgtc 26667730  T
Q  164 ccttc 168  Q
    |||||    
T  26667729 ccttc 26667725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 168
Target Start/End: Complemental strand, 26939425 - 26939322
Alignment:
Q  65 gaattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtc 163  Q
    |||||||||||| |||||| |  ||||||| ||||  ||  ||||| |||| | |||||||||||||||||| | |||| |||||| |||||| ||||||    
T  26939425 gaattaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaa-aacatagtccctttgataatatatgtc 26939327  T
Q  164 ccttc 168  Q
    |||||    
T  26939326 ccttc 26939322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 168
Target Start/End: Original strand, 29167513 - 29167616
Alignment:
Q  65 gaattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtc 163  Q
    |||||||||||| |||||| |  ||||||| ||||  ||  ||||| |||| | |||||||||||||||||| | |||  ||||||||||||| ||||||    
T  29167513 gaattaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcggaattaagaatggtcttaaaa-cattgtcccttcgataatatatgtc 29167611  T
Q  164 ccttc 168  Q
    |||||    
T  29167612 ccttc 29167616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 25968 - 25904
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcg 169  Q
    ||||| |||| |||||||||||||||||||| | |||| ||||||||||||| || |||||||||    
T  25968 aatgtcccttcgaaattaagaatggtcttaaaaacatagtcccttcgataatataagtcccttcg 25904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 168
Target Start/End: Original strand, 16649176 - 16649279
Alignment:
Q  65 gaattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtc 163  Q
    |||||||||||| |||||| |  ||||||| ||||  ||  ||||| |||| |||||||||||||||||||| | |||| ||||||||||||| ||||||    
T  16649176 gaattaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcgaaattaagaatggtcttaa-aacatagtcccttcgataatatatgtc 16649274  T
Q  164 ccttc 168  Q
    |||||    
T  16649275 ccttc 16649279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 170
Target Start/End: Original strand, 39200298 - 39200409
Alignment:
Q  60 ctttagaattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataattt 158  Q
    |||| |||||||||||| |||||| |  ||||||| ||||  ||  ||||| |||| | |||||||||||||||||| | |||| ||||||||||||| |    
T  39200298 ctttggaattaagagtgttcttaataccatagtccctttttggtttaatgtcccttcggaattaagaatggtcttaaaaacatagtcccttcgataatat 39200397  T
Q  159 atgtcccttcga 170  Q
    | ||||||||||    
T  39200398 aagtcccttcga 39200409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 27311369 - 27311431
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtccctt 167  Q
    |||||||||| ||| |||||||||||||| |||  ||| ||| ||||||||||||||||||||    
T  27311369 aatgttccttcgaagttaagaatggtcttcagagtatagtcctttcgataatttatgtccctt 27311431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 2493459 - 2493524
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcga 170  Q
    ||||| |||| | |||||||||||||||||||| |||| |||||||| ||| || |||||||||||    
T  2493459 aatgtcccttcggaattaagaatggtcttaagagcatagtcccttcggtaaattttgtcccttcga 2493524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 157
Target Start/End: Complemental strand, 3094619 - 3094526
Alignment:
Q  65 gaattaagagtgatcttaaaattatagtccattttatgta-aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatt 157  Q
    |||||||||||| |||||| |  ||||||| ||||  ||  ||||| |||| |||||||||||||||||||| | |||| ||||||||||||||    
T  3094619 gaattaagagtgttcttaagaccatagtcccttttcggtttaatgtcccttcgaaattaagaatggtcttaacagcatagtcccttcgataatt 3094526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 196
Target Start/End: Original strand, 47450820 - 47450898
Alignment:
Q  117 aaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcgaggaataaaaagta-ttttaatatcata 196  Q
    ||||||||||||||||||| | |||| || |||||||||| |||||||||||  |||||||| |||| |||||| ||||||    
T  47450820 aaattaagaatggtcttaaaaacatagtctcttcgataatatatgtcccttc--ggaataaagagtacttttaagatcata 47450898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 19798583 - 19798647
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcg 169  Q
    ||||| |||| |||||||||||||||||| | | |||| ||||||||||||| || |||||||||    
T  19798583 aatgtcccttcgaaattaagaatggtcttcaaaacataatcccttcgataatataagtcccttcg 19798647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 170
Target Start/End: Original strand, 28434222 - 28434281
Alignment:
Q  111 cctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcga 170  Q
    |||| |||||||||||||||||||| | |||| ||| ||||||||| |||||| ||||||    
T  28434222 ccttcgaaattaagaatggtcttaaaagcatagtccattcgataatatatgtctcttcga 28434281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 9352950 - 9352992
Alignment:
Q  107 tgttcctttgaaattaagaatggtcttaagatcatattccctt 149  Q
    |||||||| |||||||||||||||||||||| |||| ||||||    
T  9352950 tgttccttcgaaattaagaatggtcttaagaacatagtccctt 9352992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 16833986 - 16833937
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgata 154  Q
    ||||| |||| | ||||||||||||||||||| ||||| |||||||||||    
T  16833986 aatgtcccttcggaattaagaatggtcttaagttcatagtcccttcgata 16833937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 26927308 - 26927364
Alignment:
Q  111 cctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttc 168  Q
    |||||| |||||||||||||||||  | |||| ||||||||||||| |||||||||||    
T  26927308 cctttggaattaagaatggtcttacaa-catagtcccttcgataatatatgtcccttc 26927364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 33300844 - 33300918
Alignment:
Q  121 taagaatggtcttaagatcatattcccttcgataatttatgtcccttcgaggaataaaaagta-ttttaatatcata 196  Q
    |||||| |||||||| | |||| ||||||||||||| |||||||||||  |||||||| |||| |||||| ||||||    
T  33300844 taagaacggtcttaaaaacatagtcccttcgataatatatgtcccttc--ggaataaagagtacttttaagatcata 33300918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 443526 - 443588
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttc 168  Q
    |||||||||| | |||||||||||||||||| | |||| ||||||||||||| |||||||||||    
T  443526 aatgttccttcggaattaagaatggtcttaa-aacatagtcccttcgataatatatgtcccttc 443588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 154
Target Start/End: Complemental strand, 4577 - 4526
Alignment:
Q  103 taaatgttcctttgaaattaagaatggtcttaagatcatattcccttcgata 154  Q
    ||||||| |||| | ||||||||||||||||||| ||||| |||||||||||    
T  4577 taaatgtcccttcggaattaagaatggtcttaagttcatagtcccttcgata 4526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 5856519 - 5856465
Alignment:
Q  116 gaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcga 170  Q
    |||||||||||||||||||| | |||| ||||||||||||| || ||||||||||    
T  5856519 gaaattaagaatggtcttaaaaacatagtcccttcgataatataagtcccttcga 5856465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 170
Target Start/End: Complemental strand, 14042101 - 14042036
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcga 170  Q
    ||||| |||| |||||||||||||||||||||| |||| | |||||| ||| || |||||||||||    
T  14042101 aatgtcccttcgaaattaagaatggtcttaagaacatagttccttcggtaaattttgtcccttcga 14042036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 11570328 - 11570392
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcg 169  Q
    ||||| |||| | |||||||||||||||||| | |||| ||| ||||||||| ||||||||||||    
T  11570328 aatgtcccttcggaattaagaatggtcttaaaaacatagtccattcgataatatatgtcccttcg 11570392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 196
Target Start/End: Original strand, 11559800 - 11559890
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcgaggaataaaaagta-ttttaatatcata 196  Q
    ||||| |||| | |||||||||||||||||| | |||| ||| || |||||| |||||||||||  |||||||| |||| |||||| ||||||    
T  11559800 aatgtcccttcggaattaagaatggtcttaaaaacatagtccatttgataatatatgtcccttc--ggaataaagagtacttttaagatcata 11559890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 20747884 - 20747948
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcg 169  Q
    ||||| |||| | ||||||||||| |||||| | |||| |||||| |||||| ||||||||||||    
T  20747884 aatgtcccttcggaattaagaatgatcttaaaaacatagtccctttgataatatatgtcccttcg 20747948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 32001770 - 32001818
Alignment:
Q  112 ctttgaaattaagaatggtcttaagatcatattcccttcgataatttat 160  Q
    ||||| |||||||||||||| ||||| |||| | |||||||||||||||    
T  32001770 ctttggaattaagaatggtcgtaagaacatagttccttcgataatttat 32001818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 31327264 - 31327175
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttcgaggaataaaaagta-ttttaatatcata 196  Q
    ||||| |||| | |||||||||||||||||| | |||| | ||||||||||| |||||||||||||  ||||||||||| |||||| ||||||    
T  31327264 aatgtcccttcggaattaagaatggtcttaaaa-catagttccttcgataatatatgtcccttcga--aataaaaagtacttttaagatcata 31327175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 168
Target Start/End: Complemental strand, 14105049 - 14104985
Alignment:
Q  104 aaatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttc 168  Q
    |||||| |||||| |||||||||||||||||||| |||| |||||||| ||| ||  ||||||||    
T  14105049 aaatgtccctttggaattaagaatggtcttaagaacatagtcccttcggtaaatttcgtcccttc 14104985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 187
Target Start/End: Original strand, 13291135 - 13291195
Alignment:
Q  125 aatggtcttaagatcatattcccttcgataatttatgtcccttcgaggaataaaaagtatttt 187  Q
    |||||||||||||  ||| ||||||||||||||||||||||||  | ||||||| ||||||||    
T  13291135 aatggtcttaagagtataatcccttcgataatttatgtccctt--aagaataaatagtatttt 13291195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 17968544 - 17968606
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttc 168  Q
    ||||| |||| | |||||||||||||||||| | |||| ||||||||||||| |||||||||||    
T  17968544 aatgtcccttcggaattaagaatggtcttaaaa-catagtcccttcgataatatatgtcccttc 17968606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 25477878 - 25477940
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttc 168  Q
    ||||| |||| | |||||||||||||||||| | |||| ||||||||||||| |||||||||||    
T  25477878 aatgtcccttcggaattaagaatggtcttaaaa-catagtcccttcgataatatatgtcccttc 25477940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 25496906 - 25496968
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttc 168  Q
    ||||| |||| | |||||||||||||||||| | |||| ||||||||||||| |||||||||||    
T  25496906 aatgtcccttcggaattaagaatggtcttaaaa-catagtcccttcgataatatatgtcccttc 25496968  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 154
Target Start/End: Complemental strand, 29678271 - 29678220
Alignment:
Q  103 taaatgttcctttgaaattaagaatggtcttaagatcatattcccttcgata 154  Q
    |||||||||||| | ||||||||||||||||||| ||||| | |||||||||    
T  29678271 taaatgttccttcggaattaagaatggtcttaagttcatagttccttcgata 29678220  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 154
Target Start/End: Complemental strand, 30651431 - 30651380
Alignment:
Q  103 taaatgttcctttgaaattaagaatggtcttaagatcatattcccttcgata 154  Q
    ||||||| |||| | ||||||||||||||||||| ||||| |||||||||||    
T  30651431 taaatgtcccttcggaattaagaatggtcttaagttcatagtcccttcgata 30651380  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 7737445 - 7737494
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgata 154  Q
    ||||| |||||| ||||||||||||||||||| ||||| || ||||||||    
T  7737445 aatgtccctttggaattaagaatggtcttaagttcatagtctcttcgata 7737494  T

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Target: scaffold0352 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 7619 - 7557
Alignment:
Q  105 aatgttcctttgaaattaagaatggtcttaagatcatattcccttcgataatttatgtcccttc 168  Q
    ||||| |||| |||||||||||||||||||| | |||| ||||||||||||| |||||| ||||    
T  7619 aatgtcccttcgaaattaagaatggtcttaa-aacatagtcccttcgataatatatgtctcttc 7557  T

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Target: scaffold0182 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 157
Target Start/End: Original strand, 9499 - 9538
Alignment:
Q  118 aattaagaatggtcttaagatcatattcccttcgataatt 157  Q
    |||||||||||||||||||| |||| ||||||||||||||    
T  9499 aattaagaatggtcttaagagcatagtcccttcgataatt 9538  T

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