View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_140 (Length: 252)
Name: NF1318_low_140
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_140 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 29 - 252
Target Start/End: Complemental strand, 5836868 - 5836643
Alignment:
| Q |
29 |
attcattggatcatgcataacaactattagattagaatttgattttagctttaaattatcttagaaatataaatcaccaccctct--tttatcgtgtcct |
126 |
Q |
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| T |
5836868 |
attcattggatcatgcataacaactattagattagaatttgattttagctttaaattatcttagaaatataaatcaccaccctctcttttatcgtgtcct |
5836769 |
T |
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| Q |
127 |
tgcgtgtataatttgcaccatatagcaaggatgattttaaattgtggttgtgatcacaaataagatcctaaagtgttttatcgagttgttgagaattctt |
226 |
Q |
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| T |
5836768 |
tgcgtgtataatttgcaccatatagcaaggatgattttaaattgtggttgtgatcacaaataagattctaaagtgttttaccgagttgttgagaattctt |
5836669 |
T |
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| Q |
227 |
tctttcttctacactccgcttgtgtt |
252 |
Q |
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| T |
5836668 |
tctttcttctacacttcgcttgtgtt |
5836643 |
T |
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Back To:
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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 125
Target Start/End: Complemental strand, 19610440 - 19610347
Alignment:
| Q |
32 |
cattggatcatgcataacaactattagattagaatttgattttagctttaaattatcttagaaatataaatcaccaccctcttttatcgtgtcc |
125 |
Q |
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| T |
19610440 |
cattggatcatacataacaatcatttgattagatttctattttagctttaaattatcttaaaaatataaaccactaccctcatttatcgtgtcc |
19610347 |
T |
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