View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1318_low_141 (Length: 251)

Name: NF1318_low_141
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1318_low_141
NF1318_low_141
[»] chr4 (15 HSPs)
chr4 (1-240)||(27445973-27446212)
chr4 (1-240)||(27556454-27556709)
chr4 (132-240)||(27559315-27559423)
chr4 (159-240)||(27502882-27502963)
chr4 (92-211)||(27500442-27500558)
chr4 (153-240)||(27424589-27424676)
chr4 (92-214)||(27526213-27526332)
chr4 (152-215)||(27419171-27419234)
chr4 (152-215)||(27422035-27422098)
chr4 (159-214)||(27479885-27479940)
chr4 (152-215)||(27571600-27571663)
chr4 (152-214)||(27414405-27414467)
chr4 (94-136)||(27563543-27563585)
chr4 (159-240)||(17970283-17970364)
chr4 (159-216)||(27513875-27513932)
[»] chr3 (12 HSPs)
chr3 (153-230)||(50913474-50913551)
chr3 (153-197)||(38035033-38035077)
chr3 (153-198)||(38032260-38032305)
chr3 (153-198)||(38038525-38038570)
chr3 (159-211)||(55084770-55084822)
chr3 (153-200)||(38041918-38041965)
chr3 (159-208)||(38024982-38025031)
chr3 (153-198)||(38027433-38027478)
chr3 (159-208)||(38028873-38028922)
chr3 (159-208)||(38031434-38031483)
chr3 (159-208)||(38040188-38040237)
chr3 (159-211)||(50911973-50912025)
[»] chr8 (2 HSPs)
chr8 (153-198)||(21608235-21608280)
chr8 (159-208)||(21607403-21607452)
[»] chr2 (1 HSPs)
chr2 (159-240)||(3073553-3073634)


Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 27445973 - 27446212
Alignment:
Q  1 aagcagcaacacaattcaagttactcacaaatacaaattcaaatatttctttcttacatacacaagctgttagtgtgttgtaactcataataacaatggg 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27445973 aagcagcaacacaattcaagttactcacaaatacaaattaaaatatttctttcttacatacacaagatgttagtgtgttgtaactcataataacaatggg 27446072  T
Q  101 ctttcgcttacctggtatcattagacggtcatcatcttccaaggctgtgcatgaagtcccaaaaggctatcttgcggtttatgttggagagaaaatgaag 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27446073 ctttcgtttacctggtatcattagacggtcatcatcttccaaggctgtggatgaagtcccaaaaggctatcttgcggtttatgttggagaaaaaatgaag 27446172  T
Q  201 cgatttgtgattccaacttcattattgaatcaaccttcat 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  27446173 cgatttgtgattccaacttcattattgaatcaaccttcat 27446212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 27556709 - 27556454
Alignment:
Q  1 aagcagcaacacaattcaagttactcacaaa-tacaaattcaaatatttctttcttacatacacaagctgtt------------agtgtgttgtaactca 87  Q
    ||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||| |||||| ||||||||            ||||||||| ||||||    
T  27556709 aagcagcaatacaattcaagtcactcacaaaatacaaattcaaatatttctttctttcatacaaaagctgttgtattcattgttagtgtgttgcaactca 27556610  T
Q  88 taataa----caat--gggctttcgcttacctggtatcattagacggtcatcatcttccaaggctgtgcatgaagtcccaaaaggctatcttgcggttta 181  Q
    ||||||    ||||  ||| |||| ||||||||||||   |||| ||||||| ||||||||||||||| |||||||||||||||||||||| || |||||    
T  27556609 taataattaacaatatgggttttcacttacctggtat---tagaaggtcatcctcttccaaggctgtggatgaagtcccaaaaggctatctcgcagttta 27556513  T
Q  182 tgttggagagaaaatgaagcgatttgtgattccaacttcattattgaatcaaccttcat 240  Q
    ||||||||| ||||||||||||||||||||||| | |||||||||||| ||||||||||    
T  27556512 tgttggagaaaaaatgaagcgatttgtgattcccatttcattattgaaccaaccttcat 27556454  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 132 - 240
Target Start/End: Complemental strand, 27559423 - 27559315
Alignment:
Q  132 tcatcttccaaggctgtgcatgaagtcccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattccaacttcattattgaatc 231  Q
    |||||||||||| ||||| ||| | |||||||||||||||| || |||||||||||||| ||||||||| ||||| ||||||| | ||||||||||||||    
T  27559423 tcatcttccaagactgtggatggaatcccaaaaggctatctcgcagtttatgttggagacaaaatgaagagatttctgattcctatttcattattgaatc 27559324  T
Q  232 aaccttcat 240  Q
    || ||||||    
T  27559323 aatcttcat 27559315  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 159 - 240
Target Start/End: Complemental strand, 27502963 - 27502882
Alignment:
Q  159 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattccaacttcattattgaatcaaccttcat 240  Q
    |||||||| |||||||| |||||||| |||||||| |||||||| |||||||||||||  ||||  ||||||||| ||||||    
T  27502963 ccaaaaggatatcttgccgtttatgtaggagagaagatgaagcggtttgtgattccaatgtcatatttgaatcaaacttcat 27502882  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 211
Target Start/End: Complemental strand, 27500558 - 27500442
Alignment:
Q  92 aacaatgggctttcgcttacctggtatcattagacggtcatcatcttccaaggctgtgcatgaagtcccaaaaggctatcttgcggtttatgttggagag 191  Q
    ||||||||| ||||| |||||| ||||||| | | ||||||||||||| ||  |||||   || || |||||||| ||||| || || || || ||||||    
T  27500558 aacaatgggttttcgtttacctagtatcatcaaaaggtcatcatcttcaaaatctgtg---gacgtaccaaaaggatatctagcagtgtacgtaggagag 27500462  T
Q  192 aaaatgaagcgatttgtgat 211  Q
    ||||||||||||||||||||    
T  27500461 aaaatgaagcgatttgtgat 27500442  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 240
Target Start/End: Complemental strand, 27424676 - 27424589
Alignment:
Q  153 gaagtcccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattccaacttcattattgaatcaaccttcat 240  Q
    |||||||||||||||||||| || || |||||||||||  |||||| ||| ||||||||||||   ||||  ||||| ||||||||||    
T  27424676 gaagtcccaaaaggctatctcgcagtctatgttggagatcaaatgaggcggtttgtgattccagtatcatacttgaaccaaccttcat 27424589  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 214
Target Start/End: Complemental strand, 27526332 - 27526213
Alignment:
Q  92 aacaatgggctttcgcttacctggtatcattagacggtcatcatcttccaaggctgtgcatgaagtcccaaaaggctatcttgcggtttatgttggagag 191  Q
    ||||||||| ||||| |||||| ||||||| | | || |||||||||| || | |||  |||   | ||||| || ||||| || || ||||||||||||    
T  27526332 aacaatgggttttcgtttacctagtatcatcaaaagggcatcatcttcaaaaggtgtcgatg---ttccaaagggatatctagcagtgtatgttggagag 27526236  T
Q  192 aaaatgaagcgatttgtgattcc 214  Q
    ||||||||||| |||||||||||    
T  27526235 aaaatgaagcggtttgtgattcc 27526213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 27419234 - 27419171
Alignment:
Q  152 tgaagtcccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattcca 215  Q
    ||||||||||||||||||||| || || ||||||||||| | ||||| ||| || |||||||||    
T  27419234 tgaagtcccaaaaggctatctcgcagtctatgttggagatagaatgaggcggttcgtgattcca 27419171  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 27422098 - 27422035
Alignment:
Q  152 tgaagtcccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattcca 215  Q
    ||||||||||||||||||||| || || ||||||||||| | |||||| || || |||||||||    
T  27422098 tgaagtcccaaaaggctatctcgcagtctatgttggagatagaatgaaacggttcgtgattcca 27422035  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 27479885 - 27479940
Alignment:
Q  159 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattcc 214  Q
    |||||||||||||| || || || || ||||||||||||||||| |||||||||||    
T  27479885 ccaaaaggctatctagcagtatacgtaggagagaaaatgaagcgttttgtgattcc 27479940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 27571600 - 27571663
Alignment:
Q  152 tgaagtcccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattcca 215  Q
    ||||||||||||||||||||| || || ||||||||||| | ||||| ||| || |||||||||    
T  27571600 tgaagtcccaaaaggctatctcgcagtctatgttggagatagaatgaggcggttcgtgattcca 27571663  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 27414467 - 27414405
Alignment:
Q  152 tgaagtcccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattcc 214  Q
    |||||| ||||||||||||||||| || || |||||||| |||||||  || |||||||||||    
T  27414467 tgaagtgccaaaaggctatcttgcagtctacgttggagataaaatgagacggtttgtgattcc 27414405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 136
Target Start/End: Complemental strand, 27563585 - 27563543
Alignment:
Q  94 caatgggctttcgcttacctggtatcattagacggtcatcatc 136  Q
    ||||||| ||||| |||||||||||||||||| ||||||||||    
T  27563585 caatgggttttcgtttacctggtatcattagaaggtcatcatc 27563543  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 17970283 - 17970364
Alignment:
Q  159 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattccaacttcattattgaatcaaccttcat 240  Q
    ||||| || ||||||||||| || ||||||||| |||||||||| |||||||| || || ||||  ||||| ||| ||||||    
T  17970283 ccaaagggatatcttgcggtgtacgttggagaggaaatgaagcggtttgtgatccctacgtcatacttgaaccaaacttcat 17970364  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 27513932 - 27513875
Alignment:
Q  159 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattccaa 216  Q
    |||||||| ||||| || || ||||| ||||||||||||||||| |||||||| ||||    
T  27513932 ccaaaaggatatctagcagtgtatgtaggagagaaaatgaagcggtttgtgatcccaa 27513875  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 153 - 230
Target Start/End: Original strand, 50913474 - 50913551
Alignment:
Q  153 gaagtcccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattccaacttcattattgaat 230  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||| | ||  |||||||||  ||||| ||||||    
T  50913474 gaagtcccaaaaggctatcttgcagtgtatgttggagagaaaatgaagaggttcttgattccaatatcattcttgaat 50913551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 38035033 - 38035077
Alignment:
Q  153 gaagtcccaaaaggctatcttgcggtttatgttggagagaaaatg 197  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||    
T  38035033 gaagtcccaaaaggccatcttgcggtgtatgttggagagaaaatg 38035077  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 38032260 - 38032305
Alignment:
Q  153 gaagtcccaaaaggctatcttgcggtttatgttggagagaaaatga 198  Q
    ||||| ||||||||||||||||| || |||||||||||||||||||    
T  38032260 gaagttccaaaaggctatcttgcagtgtatgttggagagaaaatga 38032305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 38038525 - 38038570
Alignment:
Q  153 gaagtcccaaaaggctatcttgcggtttatgttggagagaaaatga 198  Q
    ||||||||||||||| ||||||| || |||||||||||||||||||    
T  38038525 gaagtcccaaaaggccatcttgcagtgtatgttggagagaaaatga 38038570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 55084770 - 55084822
Alignment:
Q  159 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgat 211  Q
    |||||||| | |||||| || ||||||||||||||||||||||| ||||||||    
T  55084770 ccaaaagggtgtcttgcagtgtatgttggagagaaaatgaagcggtttgtgat 55084822  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 38041918 - 38041965
Alignment:
Q  153 gaagtcccaaaaggctatcttgcggtttatgttggagagaaaatgaag 200  Q
    |||||||||||||||||| | ||||| |||||||||||| ||||||||    
T  38041918 gaagtcccaaaaggctatttagcggtgtatgttggagaggaaatgaag 38041965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 38025031 - 38024982
Alignment:
Q  159 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgt 208  Q
    ||||| ||||||||||| || |||||||||||| |||||||||| |||||    
T  38025031 ccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgt 38024982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 38027433 - 38027478
Alignment:
Q  153 gaagtcccaaaaggctatcttgcggtttatgttggagagaaaatga 198  Q
    ||||| ||||||||| ||||||| || |||||||||||||||||||    
T  38027433 gaagttccaaaaggccatcttgcagtgtatgttggagagaaaatga 38027478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 38028922 - 38028873
Alignment:
Q  159 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgt 208  Q
    ||||| ||||||||||| || || ||||||||| ||||||||||||||||    
T  38028922 ccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgt 38028873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 38031483 - 38031434
Alignment:
Q  159 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgt 208  Q
    ||||| ||||||||||| || |||||||||||| |||||||||| |||||    
T  38031483 ccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgt 38031434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 38040237 - 38040188
Alignment:
Q  159 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgt 208  Q
    ||||| ||||||||||| || || ||||||||| ||||||||||||||||    
T  38040237 ccaaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgt 38040188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 50912025 - 50911973
Alignment:
Q  159 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgat 211  Q
    ||||| |||||||||||||| ||||||||||| || ||||| || ||||||||    
T  50912025 ccaaagggctatcttgcggtatatgttggagacaagatgaaacggtttgtgat 50911973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 21608235 - 21608280
Alignment:
Q  153 gaagtcccaaaaggctatcttgcggtttatgttggagagaaaatga 198  Q
    ||||| ||||||||||||||||| || |||||||||||||||||||    
T  21608235 gaagttccaaaaggctatcttgcagtgtatgttggagagaaaatga 21608280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 21607452 - 21607403
Alignment:
Q  159 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgt 208  Q
    ||||| || ||||||||||| |||||||||||| |||||||||| |||||    
T  21607452 ccaaagggatatcttgcggtatatgttggagagcaaatgaagcggtttgt 21607403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 3073553 - 3073634
Alignment:
Q  159 ccaaaaggctatcttgcggtttatgttggagagaaaatgaagcgatttgtgattccaacttcattattgaatcaaccttcat 240  Q
    ||||| || ||||||||||| || ||||||||| |||||||||| |||||||| || || ||||  ||||| ||| ||||||    
T  3073553 ccaaagggatatcttgcggtgtacgttggagaggaaatgaagcggtttgtgatccctacgtcatacttgaaccaaacttcat 3073634  T

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