View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_142 (Length: 251)
Name: NF1318_low_142
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_142 |
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Alignment Details
Target: chr2 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 31 - 210
Target Start/End: Complemental strand, 12333845 - 12333672
Alignment:
| Q |
31 |
taatttgagacggagagtgtatataa-tagagatggtataaatatacattgccttcccatgagggcaaacctattatgatttatgcaattcttccctccc |
129 |
Q |
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| T |
12333845 |
taatttgagacggatagggtatataaatata-atggtataaatatacactgccttcccatgagggcaaacctataatgatttatgcaattcttccc---- |
12333751 |
T |
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| Q |
130 |
agtccccatgaaaaatttgaattccaccgctttctcggcttcacactatttggtcactagctctaatttattaaataaaat |
210 |
Q |
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| T |
12333750 |
--tccccaagaaaagtttgaataccacccctttctcggctttacactatttggtcactagctctaatttattaaataaaat |
12333672 |
T |
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