View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_145 (Length: 251)
Name: NF1318_low_145
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_145 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 22778808 - 22779051
Alignment:
| Q |
1 |
tccaacattgataactagagcatctgatattggtttaaccggtacccaatttcctttgtttctgatttctaatccaagcacatcatcatcttgaataagt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22778808 |
tccaacattgataactagagcatctgatattggtttaaccggtacccaatttcctttgtttctgatttctaatccaagcacatcatcatcttgaataagt |
22778907 |
T |
|
| Q |
101 |
aaggtaatggtggttgtgtcagagtgtggactcaaacccaatacttgctcagggttgttgcaaggagggtaatagttcacacgtaaaccttgaattaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22778908 |
aaggtaatggtggttgtgtcagagtgtggactcaaacccaatacttgctcagggttgttgcaaggagggtaatagttcacgcgtaaaccttgaattaatt |
22779007 |
T |
|
| Q |
201 |
ctttatgcagttcagcgagagcatgtttctccaaccctatgata |
244 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
22779008 |
ctttatgcagttcagcgagagcatgtttctccaaccccatgata |
22779051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 237
Target Start/End: Original strand, 22775657 - 22775889
Alignment:
| Q |
5 |
acattgataactagagcatctgatattggtttaaccggtacccaatttcctttgtttctgatttctaatccaagcacatcatcatcttgaataagtaagg |
104 |
Q |
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||||||| ||||||||||||||||||||| |||| ||||||||||||||||| | || |||||||||||| |||||||||||||||| |||||||| | |
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| T |
22775657 |
acattgacaactagagcatctgatattggagtaacgggtacccaatttcctttatgtcgaatttctaatccaggcacatcatcatcttgcataagtaaag |
22775756 |
T |
|
| Q |
105 |
taatggtggttgtgtcagagtgtggactcaaacccaatacttgctcagggttgttgcaaggagggtaatagttcacacgtaaaccttgaattaattcttt |
204 |
Q |
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|||||||| ||| ||| |||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||| |||| || |||||| |
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| T |
22775757 |
taatggtgcttgagtcggagtgtggactcaaacccaacacttgctcaggtgtgtcgcaaggagggtaatagttcacacgtaaaccctgaagtacttcttt |
22775856 |
T |
|
| Q |
205 |
atgcagttcagcgagagcatgtttctccaaccc |
237 |
Q |
| |
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||||||| |||| ||| ||||||| |||||||| |
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| T |
22775857 |
atgcagtccagcaagaacatgtttttccaaccc |
22775889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 16084234 - 16084001
Alignment:
| Q |
1 |
tccaacattgataactagagcatctgatattggtttaaccggtacccaatttcctttgtttctgatttctaatccaagcacatcatcatcttgaataagt |
100 |
Q |
| |
|
||||||||||| |||||||||||||| ||| || | |||||||||||||||||||||| || |||||||| ||| | |||||||||||||| | |||| |
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|
| T |
16084234 |
tccaacattgacaactagagcatctgctatgggagttaccggtacccaatttcctttgtgtcgaatttctaacccaggaacatcatcatcttgcaaaagt |
16084135 |
T |
|
| Q |
101 |
aaggtaatggtggttgtgtcagagtgtggactcaaacccaatacttgctcagggttgttgcaaggagggtaatagttcacacgtaaaccttgaattaatt |
200 |
Q |
| |
|
|||||||||||||||| |||| ||||||| |||||||| ||||||| |||||| || |||||||||||||||||||||||||||||||||||| || || |
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| T |
16084134 |
aaggtaatggtggttgagtcacagtgtggtctcaaacctaatactttctcaggcatgctgcaaggagggtaatagttcacacgtaaaccttgaagtactt |
16084035 |
T |
|
| Q |
201 |
ctttatgcagttcagcgagagcatgtttctccaa |
234 |
Q |
| |
|
||||||| |||||| | |||||||| |||||||| |
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|
| T |
16084034 |
ctttatgtagttcaacaagagcatgcttctccaa |
16084001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 22766136 - 22766372
Alignment:
| Q |
1 |
tccaacattgataactagagcatctgatattggtttaaccggtacccaatttcctttgtttctgatttctaatccaagcacatcatcatcttgaataagt |
100 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||| |||| || ||||||||||||||||||| |||||||| ||| |||||||||||||||| ||||| |
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|
| T |
22766136 |
tccaacattgacaacaagagcatctgatattggaataactggaacccaatttcctttgtttcgaatttctaacccaggcacatcatcatcttgcataaga |
22766235 |
T |
|
| Q |
101 |
aaggtaatggtggttgtgtcagagtgtggactcaaacccaatacttgctcagggttgttgcaaggagggtaatagttcacacgtaaaccttgaattaatt |
200 |
Q |
| |
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| |||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||| | |||||||||||| |||||| ||| ||||| ||||| |
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| T |
22766236 |
atggtaatggtgcctgtgtcagagtgtgagctcaaacccaatacttgatcaggtgtgttgcatgtagggtaatagtttacacgtgaacattgaagtaatt |
22766335 |
T |
|
| Q |
201 |
ctttatgcagttcagcgagagcatgtttctccaaccc |
237 |
Q |
| |
|
||||||||| || |||||||||||||||||||| |
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|
| T |
22766336 |
ctttatgcatcccaaaaagagcatgtttctccaaccc |
22766372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 22783281 - 22783491
Alignment:
| Q |
27 |
atattggtttaaccggtacccaatttcctttgtttctgatttctaatccaagcacatcatcatcttgaataagtaaggtaatggtggttgtgtcagagtg |
126 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||| |||||||| ||| ||||||||||||||| || || |||||||||||| ||||||||| || |
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|
| T |
22783281 |
atattggattaattggtacccaatttcctttgtttcgaatttctaacccagacacatcatcatcttgcatgagcaaggtaatggtgcctgtgtcagaatg |
22783380 |
T |
|
| Q |
127 |
tggactcaaacccaatacttgctcagggttgttgcaaggagggtaatagttcacacgtaaaccttgaattaattctttatgcagttcagcgagagcatgt |
226 |
Q |
| |
|
| ||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| | || | |||||||| |
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| T |
22783381 |
cgaactcatacctaatacttgctcaggtgtgttgcaaggagggtaatagttcacacgtaatgcttgaatgaattctttatgcaatccaacaagagcatgc |
22783480 |
T |
|
| Q |
227 |
ttctccaaccc |
237 |
Q |
| |
|
||||| ||||| |
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| T |
22783481 |
ttctctaaccc |
22783491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 23278167 - 23277961
Alignment:
| Q |
1 |
tccaacattgataactagagcatctgatattggtttaaccggtacccaatttcctttgtttctgatttctaatccaagcacatcatcatcttgaataagt |
100 |
Q |
| |
|
||||| ||||| |||| ||||| || |||||| |||| ||||||||||||||||||| || | |||||| ||| |||||||| ||||| |||| | |
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|
| T |
23278167 |
tccaagattgaccactaaagcatttggtattggattaattggtacccaatttcctttgtatcgaacttctaacccagttacatcatcgtcttgcataact |
23278068 |
T |
|
| Q |
101 |
aaggtaatggtggttgtgtcagagtgtggactcaaacccaatacttgctcagggttgttgcaaggagggtaatagttcacacgtaaaccttgaattaatt |
200 |
Q |
| |
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| |||| ||| ||| |||||||||||| |||| || | ||||||||| || |||| |||||||| ||||||||||||||||||||||||| || || |
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| T |
23278067 |
attgtaactgtgcttgcatcagagtgtggagtcaacccaattacttgctctggtgtgttacaaggaggataatagttcacacgtaaaccttgaagtactt |
23277968 |
T |
|
| Q |
201 |
ctttatg |
207 |
Q |
| |
|
||||||| |
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|
| T |
23277967 |
ctttatg |
23277961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 193
Target Start/End: Original strand, 22770639 - 22770713
Alignment:
| Q |
119 |
tcagagtgtggactcaaacccaatacttgctcagggttgttgcaaggagggtaatagttcacacgtaaaccttga |
193 |
Q |
| |
|
|||||||| ||||||| ||| | ||||| ||| || |||| ||||||||||||||||||||||| ||||||||| |
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|
| T |
22770639 |
tcagagtgcggactcacacctagtactttctcgggtgtgttacaaggagggtaatagttcacacggaaaccttga |
22770713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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