View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_15 (Length: 623)
Name: NF1318_low_15
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 149; Significance: 2e-78; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 64 - 228
Target Start/End: Complemental strand, 31864275 - 31864111
Alignment:
| Q |
64 |
aaactgagttagtgttaatgtaaatatggatttaggtacatatcattgagctcgaattgtgggcaaatatacatctaagcattgagaactacttgttaat |
163 |
Q |
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| T |
31864275 |
aaactgagttagtgttaatataaatatggatttaggtacatatcattaagctcaaattgtgggctaatatacatctaagcattgagaactacttgttaat |
31864176 |
T |
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| Q |
164 |
cacaaactcttgtagataaaaagttctccaaattacatttaaagaaactaattctattgcaatta |
228 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31864175 |
cacaaactcttgtagataaaaagttctccaaattacatttaaagaaactaattctattgcaatta |
31864111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 396 - 471
Target Start/End: Complemental strand, 31863943 - 31863868
Alignment:
| Q |
396 |
ctgacttcagactttgacttatcacatccttcttcctatggaggatttgttgagacaatcattcatatttttcatg |
471 |
Q |
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| T |
31863943 |
ctgacttcagactttgacttatcacacccttcttcctctggaggatttgttgagacaatcattcatatttttcatg |
31863868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 64 - 228
Target Start/End: Complemental strand, 31898589 - 31898428
Alignment:
| Q |
64 |
aaactgagttagtgttaatgtaaatatggatttaggtacatatcattgagctcgaattgtgggcaaatatacatctaagcattgagaactacttgttaat |
163 |
Q |
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||||||||||||| ||| |||| |||||||||||||||||||||| |||| ||||||| || |||||||||||| ||||||||| |||||||||| |
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| T |
31898589 |
aaactgagttagtattatgataaagatggatttaggtacatatcattcagcttaaattgtgcgctaatatacatctacgcattgaga---acttgttaat |
31898493 |
T |
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| Q |
164 |
cacaaactcttgtagataaaaagttctccaaattacatttaaagaaactaattctattgcaatta |
228 |
Q |
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| T |
31898492 |
cacaaacacttttggatcaaaaagtctgctaattacatttaaagaaaattatgctattgcaatta |
31898428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 129 - 228
Target Start/End: Complemental strand, 31930583 - 31930483
Alignment:
| Q |
129 |
aatatacatctaagcattgagaactacttgttaatcacaaactcttgtagat-aaaaagttctccaaattacatttaaagaaactaattctattgcaatt |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||| ||||| |||||||||||||||| | ||||||||| |||| |
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| T |
31930583 |
aatatacatctaagcattgagaactacttgttaatcacaaacatttgtggatcaaaaaagtctccgaattacatttaaagaagattattctattgtaatt |
31930484 |
T |
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| Q |
228 |
a |
228 |
Q |
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| T |
31930483 |
a |
31930483 |
T |
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