View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_151 (Length: 251)
Name: NF1318_low_151
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_151 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 37436875 - 37436637
Alignment:
| Q |
1 |
cctaaaagaataattaacaagggaacattttccaacaaatatcgaaagcttgcatttttgtgaaagataaattttagtattttggtttagtttgaatctc |
100 |
Q |
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| T |
37436875 |
cctaaaagaataattaacaagtgaacattttccaacaaatatcgaaagctagcatttttgtgaaagataaattttagtattttggtttagtttgaacctc |
37436776 |
T |
|
| Q |
101 |
taaagcatgggacttgtaaaaaggtgaagtacccataccgagtacatatattgtactcttggtacttcattttttgctcattattctactatgagtgaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37436775 |
taaagcatgggacttgtaaaaaggtgaagtacccataccgagaacatatattgtactcatggtacttcattttttgctcattattctactatgagtgaaa |
37436676 |
T |
|
| Q |
201 |
attgcgactttctcatgtatattaatatgacaatatatt |
239 |
Q |
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| T |
37436675 |
attgcgactttctcatgtatattaatatgacaatatatt |
37436637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 113 - 237
Target Start/End: Complemental strand, 478196 - 478073
Alignment:
| Q |
113 |
cttgtaaaaaggtgaagtacccataccgagtacatatattgtactcttggtacttcattttttgctcattattctactatgagtgaaaattgcgactttc |
212 |
Q |
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|||||||||||||||||||||| ||||| ||||| ||| |||||| |||||| ||| |||| ||||||||||||||| ||| ||||||||| ||||||| |
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| T |
478196 |
cttgtaaaaaggtgaagtacccgtaccgggtacacatacggtactcgtggtacatcaatttt-gctcattattctactgtgaatgaaaattgtgactttc |
478098 |
T |
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| Q |
213 |
tcatgtatattaatatgacaatata |
237 |
Q |
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| T |
478097 |
tcttgtatattaatatgataatata |
478073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 233
Target Start/End: Complemental strand, 21979136 - 21979057
Alignment:
| Q |
153 |
gtactcttggtacttcattttttgctcattattctactatgagtgaaaattgcgactttctcatgtatattaatatgacaa |
233 |
Q |
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| T |
21979136 |
gtacttttggtactccattttt-gctcattattctattgtgagtggaaaatgtggctttctcttatgtattaatatgacaa |
21979057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 22650369 - 22650312
Alignment:
| Q |
171 |
tttttgctcattattctactatgagtgaaaattgcgactttctcatgtatattaatat |
228 |
Q |
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| T |
22650369 |
tttttgctcattattctattatgagtgaaaattgtgattttcttttatatattaatat |
22650312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 237
Target Start/End: Complemental strand, 35812326 - 35812260
Alignment:
| Q |
171 |
tttttgctcattattctactatgagtgaaaattgcgactttctcatgtatattaatatgacaatata |
237 |
Q |
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| T |
35812326 |
tttttgctcattattctattgtgagtaaaaattgtggctctctcttatagattaatatgacaatata |
35812260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 28080376 - 28080428
Alignment:
| Q |
161 |
ggtacttcattttttgctcattattctactatgagtgaaaattgcgactttctc |
214 |
Q |
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|||||||||||||| | ||||||||||| | ||||||||||||| ||||||||| |
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| T |
28080376 |
ggtacttcattttt-gttcattattctattgtgagtgaaaattgtgactttctc |
28080428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 237
Target Start/End: Complemental strand, 16422577 - 16422494
Alignment:
| Q |
153 |
gtactcttggtacttcattttttgctcattattctactatgagtgaaaattgcgactttctcatgtatattaatatgacaatata |
237 |
Q |
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|||||| |||||||||||||||| ||||||||| || | ||||||||| || ||| ||||| | || | ||||||||||||||| |
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| T |
16422577 |
gtactcgtggtacttcatttttt-ctcattattgtattgtgagtgaaatttatgacattctcttatacactaatatgacaatata |
16422494 |
T |
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