View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_154 (Length: 251)
Name: NF1318_low_154
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_154 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 4824653 - 4824439
Alignment:
| Q |
1 |
ttgttgcattagtgctggatatgttgccggttcaacaatggcagccattgcattaaaatttccatcaaccgttgtaatggtcgttgatatcacaaaatcg |
100 |
Q |
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| T |
4824653 |
ttgttgcattagtgctggatatgttgccggttcaacgatggcagccattgcattaaaatttacatcaactgatgtaacggtcgttgatatcacaaaatcg |
4824554 |
T |
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| Q |
101 |
tgcattgtagcatggtacaacgatcaaattcctatctatcagccaggttttgatggtttagtaaagcaatgtcgcatcaaaaacctcttcttcggcacca |
200 |
Q |
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| T |
4824553 |
cgcattgtagcatggtacaacgatcaaattcctatctatcagccaggttttgatggtttagtaaagcaatgtcgcatcaaaaacctcttcttcggcacca |
4824454 |
T |
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| Q |
201 |
atgtttaaaaacatg |
215 |
Q |
| |
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||||||||||||||| |
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| T |
4824453 |
atgtttaaaaacatg |
4824439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 237
Target Start/End: Complemental strand, 4804024 - 4803910
Alignment:
| Q |
123 |
atcaaattcctatctatcagccaggttttgatggtttagtaaagcaatgtcgcatcaaaaacctcttcttcggcaccaatgtttaaaaacatgtctacga |
222 |
Q |
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||||| ||||||||||| |||||||| |||||| | |||||||||||||||| ||| |||| ||||| ||| ||||| ||||||||||||| || |
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| T |
4804024 |
atcaacttcctatctatgagccaggtattgatgatgtagtaaagcaatgtcgatgcaagtaccttgtcttcaacactgatgttgaaaaacatgtctatga |
4803925 |
T |
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| Q |
223 |
agctgacattgtgtt |
237 |
Q |
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| T |
4803924 |
agctgacattgtgtt |
4803910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 230
Target Start/End: Original strand, 4797943 - 4798056
Alignment:
| Q |
117 |
acaacgatcaaattcctatctatcagccaggttttgatggtttagtaaagcaatgtcgcatcaaaaacctcttcttcggcaccaatgtttaaaaacatgt |
216 |
Q |
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| T |
4797943 |
acaatgatcaacttgccatctatgaaccaggtcttgatgatgtagtaaagcaatatcgcggcaagaaccttttcttcagcactgatgttaaaaaacatgt |
4798042 |
T |
|
| Q |
217 |
ctacgaagctgaca |
230 |
Q |
| |
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| | |||||||||| |
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| T |
4798043 |
ccatgaagctgaca |
4798056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 224
Target Start/End: Complemental strand, 4819664 - 4819520
Alignment:
| Q |
80 |
gtcgttgatatcacaaaatcgtgcattgtagcatggtacaacgatcaaattcctatctatcagccaggttttgatggtttagtaaagcaatgtcgcatca |
179 |
Q |
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|||||||||||| | |||||| | |||| || ||| ||||| ||||| ||||||||||| || | ||| |||||| | ||||||||||||||||| || |
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| T |
4819664 |
gtcgttgatatctcgaaatcgcgtattgcagtgtggcacaacaatcaagttcctatctatgagtccggtcttgatgatgtagtaaagcaatgtcgcggca |
4819565 |
T |
|
| Q |
180 |
aaaacctcttcttcggcaccaatgtttaaaaacatgtctacgaag |
224 |
Q |
| |
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| | | | |||||| ||| | ||| |||||||||||||||||| |
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| T |
4819564 |
agagctttttcttcagcattcaagttgaaaaacatgtctacgaag |
4819520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 237
Target Start/End: Complemental strand, 10779452 - 10779302
Alignment:
| Q |
86 |
gatatcacaaaatcgtgcattgtagcatggtacaacgatcaaattcctatctatcagccaggttttgatggtttagtaaagcaatgtcgcatcaaaaacc |
185 |
Q |
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|||||| | |||||| |||||| || ||| ||||| ||||| ||||||||||| ||| | | ||||| | |||||||| ||||||||| ||| | || |
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| T |
10779452 |
gatatctcgaaatcgcgcattgcagtgtggaacaacaatcaacttcctatctatgagcaaaatcttgattatgtagtaaagtaatgtcgcagcaaga-cc |
10779354 |
T |
|
| Q |
186 |
tcttcttcggcaccaatgtttaaaaacatgtctacgaagctgacattgtgtt |
237 |
Q |
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| |||||| |||| ||||| ||||||||||||| |||||| | |||||||| |
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| T |
10779353 |
ttttcttcagcactgatgttgaaaaacatgtctatgaagctaaaattgtgtt |
10779302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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