View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_156 (Length: 250)
Name: NF1318_low_156
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_156 |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 10 - 201
Target Start/End: Complemental strand, 2487421 - 2487230
Alignment:
| Q |
10 |
tatatatattcatcgatgcgtcaaaaacaacctatattcttttttctgtcaaaaacgaaagaagcgctctagtaattttgagtgaagaagaacccaaatc |
109 |
Q |
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| T |
2487421 |
tatatatattcatcgatgcgtcaaaaacaacctatattcttttttctgtcaaaaacgaaagaagcgctctagtaattttgagtgaagaagaacccaaatc |
2487322 |
T |
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| Q |
110 |
ctctcatcaaattaatccaaggtatgtacctnnnnnnntctccaaagtacttcatctctttaataaattaattttttgcaattcataaaggg |
201 |
Q |
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| T |
2487321 |
cactcatcaaattaatccaaggtatgtacctaaaaaaatctccaaagtacttcatctctttaataaattaattttttgcaattcataaaggg |
2487230 |
T |
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Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 10 - 201
Target Start/End: Complemental strand, 27090007 - 27089816
Alignment:
| Q |
10 |
tatatatattcatcgatgcgtcaaaaacaacctatattcttttttctgtcaaaaacgaaagaagcgctctagtaattttgagtgaagaagaacccaaatc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27090007 |
tatatatattcatcgatgcgtcaaaaacaacctatattcttttttctgtcaaaaacgaaagaagcgctctagtaattttgagtgaagaagaacccaaatc |
27089908 |
T |
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| Q |
110 |
ctctcatcaaattaatccaaggtatgtacctnnnnnnntctccaaagtacttcatctctttaataaattaattttttgcaattcataaaggg |
201 |
Q |
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| T |
27089907 |
cactcatcaaattaatccaaggtatgtacctaaaaaaatctccaaagtacttcatctctttaataaattaattttttgcaattcataaaggg |
27089816 |
T |
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