View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_16 (Length: 621)
Name: NF1318_low_16
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 208 - 365
Target Start/End: Original strand, 29864056 - 29864210
Alignment:
| Q |
208 |
catttagaaataaaagtaacacgactatcgtttgcatcttatgaataaggaagtagttaaccacgagttgatgaagttctacgcccacattattccattg |
307 |
Q |
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| T |
29864056 |
catttagaaataagagtaatacgactatcgtttgcatcttatgattaaggaagtagttaaccacgagttgat---gtcctacggccacagtatcccattg |
29864152 |
T |
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| Q |
308 |
agacttgaagaatatgggagagaagcatcatttgtggagatgttaactttcgtatact |
365 |
Q |
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| T |
29864153 |
agacttgaagaatatgggagagaattatcatttgtggagatgttaactttcgcatact |
29864210 |
T |
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Target: chr2; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 247 - 431
Target Start/End: Original strand, 29849447 - 29849633
Alignment:
| Q |
247 |
tatgaataaggaagtagttaaccacgagttgatgaagttctacgcccacattattccattgagacttgaagaatatgggagagaag-catcatttgtgga |
345 |
Q |
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| T |
29849447 |
tatgattaaggaagtagtttaccagaagttgatgaagttctacgcccacagtatcccattgagatttgaagaatatgggaaagaagccatcacttctgaa |
29849546 |
T |
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| Q |
346 |
gatgttaactttcgtatactaaaaagagcttgttttgtttcctcattag--taatgactattacggaaattaggaaaagattgaagag |
431 |
Q |
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| T |
29849547 |
gatgttaacttttgcatactaaaaagagcttgttttg-ttcctccatagtataatcactattacggaaattaggaaaagatttaagag |
29849633 |
T |
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