View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_164 (Length: 240)
Name: NF1318_low_164
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_164 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 5 - 236
Target Start/End: Original strand, 21706680 - 21706911
Alignment:
| Q |
5 |
aattgaagaggtttttagacatgatggtggagacagaactatcgatgaaatggaagttattcttccaaacttgactaagataacactatattgtttgccg |
104 |
Q |
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| T |
21706680 |
aattgaagaggtttttaaacatgatggtggagacagaactattgatgaaatggaagttattcttccaaacttgacagagataagactatattgtttgccg |
21706779 |
T |
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| Q |
105 |
aattttgttgatatctgccagggttataagttacatgctgtgaaacttggacgactcgaaattgttgaatgccccaaaatttctcaaagtttgaatgcaa |
204 |
Q |
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| T |
21706780 |
aatttttttgatatctgccagggttataagttacaggctgtgaaacttggacgactcgaaattgatgaatgccccaaagtttctcaaagtttgaatgcaa |
21706879 |
T |
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| Q |
205 |
ttcaggtgacataaaagagcttttatttgcac |
236 |
Q |
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| T |
21706880 |
ttcaggtgacataaaagagcttttatttgcac |
21706911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 236
Target Start/End: Complemental strand, 21712782 - 21712548
Alignment:
| Q |
7 |
ttgaagaggtttttagacatgatggtggagacagaactatcgatgaaatggaagtt------attcttccaaacttgactaagataacactatattgttt |
100 |
Q |
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| T |
21712782 |
ttgaagaggtttttagaaatggcggtggagacagaactgtaaatgaaatggaagttgttcttattcttccaaacttgacagagataacgctcaacttttt |
21712683 |
T |
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| Q |
101 |
gccgaattttgttgatatctgccagggttataagttacatgctgtgaaacttggacgactcgaaattgttgaatgccccaaaatttctcaaagtttgaat |
200 |
Q |
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| T |
21712682 |
accgagttttgttcatatctgccagggttgtaagttacaggctgtgaaacttcaacaaatcaacatatatgaatgccccaaaattgctccaagtgtgaaa |
21712583 |
T |
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| Q |
201 |
gcaattcaggtgacataaaagagcttttatttgcac |
236 |
Q |
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| T |
21712582 |
gaaattcaggtgaca-aaaagagtttttatttgcac |
21712548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 21118152 - 21118286
Alignment:
| Q |
10 |
aagaggtttttagacatgatggtggagacagaactatcgatgaaatggaagttattcttccaaacttgactaagataacactatattgtttgccgaattt |
109 |
Q |
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| T |
21118152 |
aagaggtttttagacatagtagtggagacaacgttatgaatgaaatggaaattgttcttccaaacttgaccgagataacattgagtaatctaacgaattt |
21118251 |
T |
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| Q |
110 |
tgttgatatctgccagggttataagttacatgctg |
144 |
Q |
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| T |
21118252 |
tgtagatatctgccatggttgtaagttacatgctg |
21118286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 21125572 - 21125648
Alignment:
| Q |
10 |
aagaggtttttagacatgatggtggagacagaactatcgatgaaatggaagttattcttccaaacttgactaagata |
86 |
Q |
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| T |
21125572 |
aagaggtttttagacatagtagtggagacaacgttatgaatgaaatggaaattgttcttccaaacttgaccaagata |
21125648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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