View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_165 (Length: 239)
Name: NF1318_low_165
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_165 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 49273686 - 49273461
Alignment:
| Q |
1 |
caaataatggctaaaaattaacaggcaaagtnnnnnnnnntacaaccaaaagataagatttaagaggagggagggaacttaccaaatcattcctgttaaa |
100 |
Q |
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| T |
49273686 |
caaataatggctaaaaattaacaggcaaagtaaaaaaaa-tacaaccaaaagataagatttaagaggagggagggaacttaccaaatcattcctgttaaa |
49273588 |
T |
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| Q |
101 |
ggaacgtcatactgaaagaatgctcctattccaaggaatgactccattgaaattggaaacaagagttttttcacaatcagaagagaatttcgcaaataat |
200 |
Q |
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| T |
49273587 |
ggaacggcatactgaaagaacgctcctattccaaggaatgactccattgaaattggaaacaagagttttttcacaatcagaagagaatttcacaaataat |
49273488 |
T |
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| Q |
201 |
tcaagtataatcacattcaactagtat |
227 |
Q |
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| T |
49273487 |
tcaagtataatcacattcaactagtat |
49273461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 58 - 227
Target Start/End: Original strand, 49273751 - 49273919
Alignment:
| Q |
58 |
atttaagaggagggagggaacttaccaaatcattcctgttaaaggaacgtcatactgaaagaatgctcctattccaaggaatgactccattgaaattgga |
157 |
Q |
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| T |
49273751 |
atttaagaggagggagggaactcgccaaatcattcctgttaaaggaacggcatactgaaagaacgctcctattccaaggaatgactccattgaaattgga |
49273850 |
T |
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| Q |
158 |
aacaagagttttttcacaatcagaagagaatttcgcaaataattcaagtataatcacattcaactagtat |
227 |
Q |
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| T |
49273851 |
atc-ctagttttttcacaatcagccgagaatttcatatataatacaagtataatcacattcaaccagtat |
49273919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 50 - 227
Target Start/End: Complemental strand, 49255890 - 49255714
Alignment:
| Q |
50 |
aagataagatttaagaggagggagggaacttaccaaatcattcctgttaaaggaacgtcatactgaaagaatgctcctattccaaggaatgactccattg |
149 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||| | | |||||| |||| ||||||| | ||||||||| ||||||||||||| |
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| T |
49255890 |
aagataaaatttaagaggagggagggaactcaccaaatcattccagctgaaggaatagcatagcgaaagaactcacctattccatcaaatgactccattg |
49255791 |
T |
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| Q |
150 |
aaattggaaacaagagttttttcacaatcagaagagaatttcgcaaataattcaagtataatcacattcaactagtat |
227 |
Q |
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| T |
49255790 |
aaattgtaaac-cgcgttttttcacaatcagcagagaatttcatatataatccaaggataatcacattcaaccagtat |
49255714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 65 - 227
Target Start/End: Complemental strand, 49268598 - 49268438
Alignment:
| Q |
65 |
aggagggagggaacttaccaaatcattcctgttaaaggaacgtcatactgaaagaatgctcctattccaaggaatgactccattgaaattggaaacaaga |
164 |
Q |
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||||||||| ||||| ||||||||||||||| | | |||| | || ||||||| |||||| ||||||||||| |||||||||||| |||| | || |
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| T |
49268598 |
aggagggagtgaact-accaaatcattcctgctgatggaatagcgtatcgaaagaactctcctactccaaggaatggctccattgaaatcggaaccc-ga |
49268501 |
T |
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| Q |
165 |
gttttttcacaatcagaagagaatttcgcaaataattcaagtataatcacattcaactagtat |
227 |
Q |
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|||| ||||||||||| ||||||||| | ||||| |||||||||||||||||||| ||||| |
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| T |
49268500 |
gtttcttcacaatcagtggagaatttcatatataatccaagtataatcacattcaaccagtat |
49268438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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