View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1318_low_166 (Length: 236)
Name: NF1318_low_166
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_166 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 496172 - 496291
Alignment:
| Q |
1 |
gaggatgctatgcaccttaaatagtctttttagccatttaaacggaacccccggatcctcgcaagagaacaagcgtttagtcaacttgggacaatcaaaa |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||| || |
|
|
| T |
496172 |
gaggatggtatgcaccttaaatagtctttttagccatttaaatggaactcccggatcctcacaagagaacaagcgtttagtcaacttgggacaatcataa |
496271 |
T |
|
| Q |
101 |
atatataatccagacctatg |
120 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
496272 |
atatacaatccagacctatg |
496291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University