View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_170 (Length: 226)
Name: NF1318_low_170
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_170 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 40864058 - 40864279
Alignment:
| Q |
3 |
agttgtttgattacatataagataacttcgatggatttctttgccagtcttctcaaatcatcattgtgcaaagtgatgaggttgacattctgaatgcaaa |
102 |
Q |
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| T |
40864058 |
agttgtttgattacatataagataacttcgatggatttctttgccagtcttctcaaatcatcattgtgcaaagtgatgaggttgacattctgaatgcaaa |
40864157 |
T |
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| Q |
103 |
ttatttattatcttttgatgctgcctgtcttagtgtgtgcagttttgcactcttttaaccaaataaaaaacttattatgtgccattagttgaaaagagtt |
202 |
Q |
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| T |
40864158 |
ttatttattatcttttgatgctgcctgtcttagtgtgtgcagttttgcactcttttaaccaaataaaaaacttattatgtgccataagttgaaaagagtt |
40864257 |
T |
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| Q |
203 |
ggagatataatgaagtataatc |
224 |
Q |
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|||||||||||||||||||||| |
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| T |
40864258 |
ggagatataatgaagtataatc |
40864279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 21874717 - 21874543
Alignment:
| Q |
20 |
taagataacttcgatggatttctttgccagtcttctcaaatcatcattgtgcaaagtgatgaggttgacattctgaatgcaaattatttatta---tctt |
116 |
Q |
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| T |
21874717 |
taagataacttatatggatttctttgtcaatcttatcttagcatcattgtgcaaagtgatgagattaacattttgaatctaagttatatagtaccatctt |
21874618 |
T |
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| Q |
117 |
ttgatgctgcctgtcttagtgtgtgcagttttgcactcttttaaccaaataa-aaaacttattatgtgccattagtt |
192 |
Q |
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| T |
21874617 |
ttgctgct--ctgtcttagtgtgtacagttttgtactcttttagccaaataaaaaaacttattatgcgcaattagtt |
21874543 |
T |
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