View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1318_low_172 (Length: 221)

Name: NF1318_low_172
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1318_low_172
NF1318_low_172
[»] chr2 (19 HSPs)
chr2 (62-149)||(33290047-33290141)
chr2 (64-103)||(13284752-13284791)
chr2 (175-210)||(23854886-23854921)
chr2 (175-210)||(26560774-26560809)
chr2 (175-217)||(33290165-33290207)
chr2 (63-104)||(33290385-33290426)
chr2 (175-210)||(22263411-22263446)
chr2 (175-210)||(23806075-23806110)
chr2 (175-210)||(26236250-26236285)
chr2 (175-210)||(42670939-42670974)
chr2 (63-104)||(12419060-12419101)
chr2 (63-104)||(12431120-12431161)
chr2 (63-104)||(30960009-30960050)
chr2 (175-219)||(13284628-13284672)
chr2 (175-207)||(17463217-17463249)
chr2 (105-149)||(19251756-19251799)
chr2 (113-149)||(23046763-23046799)
chr2 (175-207)||(39878228-39878260)
chr2 (109-149)||(44098908-44098948)
[»] chr6 (10 HSPs)
chr6 (63-149)||(9854173-9854264)
chr6 (63-103)||(14681221-14681261)
chr6 (175-210)||(30618085-30618120)
chr6 (175-210)||(9481305-9481340)
chr6 (175-210)||(10321951-10321986)
chr6 (175-209)||(33637683-33637717)
chr6 (66-103)||(34113604-34113641)
chr6 (175-207)||(2299529-2299561)
chr6 (105-149)||(14680931-14680974)
chr6 (56-104)||(15942475-15942523)
[»] chr8 (17 HSPs)
chr8 (175-217)||(21144725-21144767)
chr8 (175-216)||(22494501-22494542)
chr8 (175-210)||(2583443-2583478)
chr8 (177-210)||(5554992-5555025)
chr8 (85-149)||(26136706-26136777)
chr8 (105-138)||(39888529-39888562)
chr8 (63-147)||(40486628-40486718)
chr8 (175-207)||(21148156-21148188)
chr8 (175-210)||(10108493-10108528)
chr8 (175-210)||(14767727-14767762)
chr8 (175-206)||(14820421-14820452)
chr8 (175-210)||(17623107-17623142)
chr8 (175-216)||(42605870-42605911)
chr8 (175-216)||(43481534-43481575)
chr8 (105-149)||(21148222-21148266)
chr8 (175-207)||(26136811-26136843)
chr8 (108-144)||(39808698-39808734)
[»] chr3 (15 HSPs)
chr3 (64-149)||(5800891-5800982)
chr3 (175-210)||(5800728-5800763)
chr3 (175-210)||(14161994-14162029)
chr3 (175-210)||(14262256-14262291)
chr3 (175-210)||(52552908-52552943)
chr3 (62-147)||(36990948-36991039)
chr3 (62-147)||(37016388-37016479)
chr3 (63-104)||(32998470-32998511)
chr3 (64-104)||(35740817-35740857)
chr3 (175-210)||(15328583-15328618)
chr3 (63-104)||(35741922-35741963)
chr3 (175-207)||(17649230-17649262)
chr3 (175-207)||(21633022-21633054)
chr3 (105-149)||(43572437-43572481)
chr3 (175-207)||(45970041-45970073)
[»] chr5 (13 HSPs)
chr5 (175-210)||(7126137-7126172)
chr5 (175-210)||(27159177-27159212)
chr5 (175-210)||(29444929-29444964)
chr5 (175-216)||(17762399-17762440)
chr5 (175-219)||(14144015-14144059)
chr5 (175-210)||(14411820-14411855)
chr5 (63-149)||(22571076-22571169)
chr5 (179-210)||(24074426-24074457)
chr5 (77-149)||(24837182-24837261)
chr5 (77-149)||(29444819-29444898)
chr5 (105-149)||(14411952-14411995)
chr5 (175-219)||(22571297-22571341)
chr5 (178-210)||(31799863-31799895)
[»] chr4 (10 HSPs)
chr4 (175-210)||(9396822-9396857)
chr4 (175-210)||(18713083-18713118)
chr4 (175-210)||(34064202-34064237)
chr4 (175-210)||(37012927-37012962)
chr4 (80-149)||(43312225-43312301)
chr4 (62-104)||(50462734-50462776)
chr4 (175-219)||(4355995-4356039)
chr4 (175-207)||(26252394-26252426)
chr4 (63-103)||(36887679-36887719)
chr4 (175-207)||(41947076-41947108)
[»] chr1 (15 HSPs)
chr1 (175-210)||(8292927-8292962)
chr1 (175-210)||(20995792-20995827)
chr1 (175-210)||(43539470-43539505)
chr1 (64-149)||(16294233-16294325)
chr1 (62-104)||(17500767-17500809)
chr1 (62-103)||(16294047-16294088)
chr1 (175-216)||(34749325-34749366)
chr1 (175-216)||(39711189-39711230)
chr1 (175-219)||(17606422-17606466)
chr1 (175-210)||(4907182-4907217)
chr1 (175-217)||(16294167-16294209)
chr1 (77-149)||(4906975-4907054)
chr1 (65-98)||(7473792-7473825)
chr1 (175-216)||(33628910-33628951)
chr1 (175-219)||(42510234-42510278)
[»] chr7 (4 HSPs)
chr7 (175-210)||(1250426-1250461)
chr7 (175-210)||(48648449-48648484)
chr7 (105-149)||(24195082-24195126)
chr7 (175-207)||(38879944-38879976)
[»] scaffold0220 (1 HSPs)
scaffold0220 (63-96)||(26478-26511)
[»] scaffold0809 (1 HSPs)
scaffold0809 (178-210)||(1533-1565)


Alignment Details
Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 62 - 149
Target Start/End: Original strand, 33290047 - 33290141
Alignment:
Q  62 tagggttaatactgtttttggtccctgtaatattagcgaattc-------agtccctgtaaaaataataatttagattctgtccttgtaatttca 149  Q
    |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||  || |||||||||||||||||||||||||||    
T  33290047 tagggttaatactgtttttggtccctgtaatattagcgaattccagttttagtccctgtaaaataaaaaatttagattctgtccttgtaatttca 33290141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 103
Target Start/End: Complemental strand, 13284791 - 13284752
Alignment:
Q  64 gggttaatactgtttttggtccctgtaatattagcgaatt 103  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  13284791 gggttaatactgcttttggtccctgtaatattagcgaatt 13284752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 23854886 - 23854921
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtg 210  Q
    ||||||||||||||||||||||||||||||||||||    
T  23854886 tacagggacgtaatttatgcagattctgctgacgtg 23854921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 26560774 - 26560809
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtg 210  Q
    ||||||||||||||||||||||||||||||||||||    
T  26560774 tacagggacgtaatttatgcagattctgctgacgtg 26560809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 217
Target Start/End: Complemental strand, 33290207 - 33290165
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtgcttaaat 217  Q
    |||||||||| ||||||||||||||||||||||||| ||||||    
T  33290207 tacagggacgaaatttatgcagattctgctgacgtggttaaat 33290165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 33290426 - 33290385
Alignment:
Q  63 agggttaatactgtttttggtccctgtaatattagcgaattc 104  Q
    ||||||||||| | ||||||||||||||||||||||||||||    
T  33290426 agggttaataccgcttttggtccctgtaatattagcgaattc 33290385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 22263411 - 22263446
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtg 210  Q
    ||||||||||||||||||||||||| ||||||||||    
T  22263411 tacagggacgtaatttatgcagattatgctgacgtg 22263446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 23806110 - 23806075
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtg 210  Q
    |||||||||||||||||||| |||||||||||||||    
T  23806110 tacagggacgtaatttatgcggattctgctgacgtg 23806075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 26236285 - 26236250
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtg 210  Q
    ||||||||||||||||||||| ||||||||||||||    
T  26236285 tacagggacgtaatttatgcaaattctgctgacgtg 26236250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 42670939 - 42670974
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtg 210  Q
    |||||| |||||||||||||||||||||||||||||    
T  42670939 tacaggaacgtaatttatgcagattctgctgacgtg 42670974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 12419101 - 12419060
Alignment:
Q  63 agggttaatactgtttttggtccctgtaatattagcgaattc 104  Q
    |||||||||||   ||||||||||||||||||||||||||||    
T  12419101 agggttaataccacttttggtccctgtaatattagcgaattc 12419060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 12431161 - 12431120
Alignment:
Q  63 agggttaatactgtttttggtccctgtaatattagcgaattc 104  Q
    |||||||||||   ||||||||||||||||||||||||||||    
T  12431161 agggttaataccacttttggtccctgtaatattagcgaattc 12431120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 30960050 - 30960009
Alignment:
Q  63 agggttaatactgtttttggtccctgtaatattagcgaattc 104  Q
    |||||||||||   ||||||||||||||||||||||||||||    
T  30960050 agggttaataccacttttggtccctgtaatattagcgaattc 30960009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 13284628 - 13284672
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtgcttaaatga 219  Q
    |||| |||||||||||||| |||||||| ||||||| ||||||||    
T  13284628 tacaaggacgtaatttatgtagattctgttgacgtggttaaatga 13284672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 17463249 - 17463217
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgac 207  Q
    |||||||||||||||||||||||||||| ||||    
T  17463249 tacagggacgtaatttatgcagattctgttgac 17463217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 19251799 - 19251756
Alignment:
Q  105 agtccctgtaaaaataataatttagattctgtccttgtaatttca 149  Q
    |||||||||||||| || | |||||||||||||||||||||||||    
T  19251799 agtccctgtaaaaaaaaga-tttagattctgtccttgtaatttca 19251756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 23046763 - 23046799
Alignment:
Q  113 taaaaataataatttagattctgtccttgtaatttca 149  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  23046763 taaaaaaaataatttagattctgtccctgtaatttca 23046799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 39878260 - 39878228
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgac 207  Q
    ||||||||||||||||||||||||| |||||||    
T  39878260 tacagggacgtaatttatgcagattttgctgac 39878228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 44098948 - 44098908
Alignment:
Q  109 cctgtaaaaataataatttagattctgtccttgtaatttca 149  Q
    |||||||||| ||||||||||||| ||||| ||||||||||    
T  44098948 cctgtaaaaaaaataatttagattatgtccctgtaatttca 44098908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 9854264 - 9854173
Alignment:
Q  63 agggttaatactgtttttggtccctgtaatattagcgaattc-------agtccctgtaaaaataataatttagattctgtccttgtaatttca 149  Q
    ||||||||||||| |||| |||||||||||||||||||||||       ||||  |||||||||||||||||||||| ||||||||||||||||    
T  9854264 agggttaatactgctttttgtccctgtaatattagcgaattctggttttagtc--tgtaaaaataataatttagattttgtccttgtaatttca 9854173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 14681261 - 14681221
Alignment:
Q  63 agggttaatactgtttttggtccctgtaatattagcgaatt 103  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  14681261 agggttaatactatttttggtccctgtaatattagcgaatt 14681221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 30618120 - 30618085
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtg 210  Q
    ||||||||||||||||||||||||||||||||||||    
T  30618120 tacagggacgtaatttatgcagattctgctgacgtg 30618085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 9481340 - 9481305
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtg 210  Q
    |||||| |||||||||||||||||||||||||||||    
T  9481340 tacaggaacgtaatttatgcagattctgctgacgtg 9481305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 10321951 - 10321986
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtg 210  Q
    |||| |||||||||||||||||||||||||||||||    
T  10321951 tacaaggacgtaatttatgcagattctgctgacgtg 10321986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 209
Target Start/End: Complemental strand, 33637717 - 33637683
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgt 209  Q
    |||||||||||||| ||||||||||||||||||||    
T  33637717 tacagggacgtaatctatgcagattctgctgacgt 33637683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 34113641 - 34113604
Alignment:
Q  66 gttaatactgtttttggtccctgtaatattagcgaatt 103  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  34113641 gttaataccatttttggtccctgtaatattagcgaatt 34113604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 2299529 - 2299561
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgac 207  Q
    |||||||||||||||||||||||||||| ||||    
T  2299529 tacagggacgtaatttatgcagattctgttgac 2299561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 14680931 - 14680974
Alignment:
Q  105 agtccctgtaaaaataataatttagattctgtccttgtaatttca 149  Q
    |||||||||||||| ||||||||||||| |||| |||||||||||    
T  14680931 agtccctgtaaaaa-aataatttagattttgtctttgtaatttca 14680974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 15942523 - 15942475
Alignment:
Q  56 acatcctagggttaatactgtttttggtccctgtaatattagcgaattc 104  Q
    ||||| ||||||||||| | ||||||||||||| ||||| |||||||||    
T  15942523 acatcttagggttaatattatttttggtccctgcaatatgagcgaattc 15942475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 21144725 - 21144767
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtgcttaaat 217  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  21144725 tacagggacgtaatttatgcagattctgctgacgtggttaaat 21144767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 22494542 - 22494501
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtgcttaaa 216  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  22494542 tacagggacgtaatttatgcagattctgctgacgtgattaaa 22494501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 2583478 - 2583443
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtg 210  Q
    ||||||||||||||||||||||||||||||||||||    
T  2583478 tacagggacgtaatttatgcagattctgctgacgtg 2583443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 210
Target Start/End: Complemental strand, 5555025 - 5554992
Alignment:
Q  177 cagggacgtaatttatgcagattctgctgacgtg 210  Q
    ||||||||||||||||||||||||||||||||||    
T  5555025 cagggacgtaatttatgcagattctgctgacgtg 5554992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 26136706 - 26136777
Alignment:
Q  85 cctgtaatattagcgaattc-------agtccctgtaaaaataataatttagattctgtccttgtaatttca 149  Q
    ||||||||||||||||||||       |||||||||||||| || |||||||||| ||||||||||||||||    
T  26136706 cctgtaatattagcgaattccagttttagtccctgtaaaaaaaaaaatttagattttgtccttgtaatttca 26136777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 39888529 - 39888562
Alignment:
Q  105 agtccctgtaaaaataataatttagattctgtcc 138  Q
    ||||||||||||||||||||||||||||||||||    
T  39888529 agtccctgtaaaaataataatttagattctgtcc 39888562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 147
Target Start/End: Original strand, 40486628 - 40486718
Alignment:
Q  63 agggttaatactgtttttggtccctgtaatattagcgaattc-------agtccctgtaaaaataataatttagattctgtccttgtaattt 147  Q
    ||||||||||||  |||||||||||||||||||| |||||||       |||||||| ||||| || | |||||||||||||||||||||||    
T  40486628 agggttaatactacttttggtccctgtaatattaacgaattccgattttagtccctgcaaaaa-aaaagtttagattctgtccttgtaattt 40486718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 21148156 - 21148188
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgac 207  Q
    |||||||||||||||||||||||||||||||||    
T  21148156 tacagggacgtaatttatgcagattctgctgac 21148188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 10108528 - 10108493
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtg 210  Q
    |||| |||||||||||||||||||||||||||||||    
T  10108528 tacaaggacgtaatttatgcagattctgctgacgtg 10108493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 14767727 - 14767762
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtg 210  Q
    |||||||||||||||||||||||||||| |||||||    
T  14767727 tacagggacgtaatttatgcagattctgttgacgtg 14767762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 206
Target Start/End: Complemental strand, 14820452 - 14820421
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctga 206  Q
    ||||||||||||||||||||||||||||||||    
T  14820452 tacagggacgtaatttatgcagattctgctga 14820421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 17623107 - 17623142
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtg 210  Q
    ||||||||| ||||||||||||||||||||||||||    
T  17623107 tacagggacataatttatgcagattctgctgacgtg 17623142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 42605911 - 42605870
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtgcttaaa 216  Q
    ||||||||||||||||||||| ||||| |||||||| |||||    
T  42605911 tacagggacgtaatttatgcatattctactgacgtgattaaa 42605870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 43481534 - 43481575
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtgcttaaa 216  Q
    |||| |||||||||||||||||||| |||||||||| |||||    
T  43481534 tacaaggacgtaatttatgcagattgtgctgacgtgattaaa 43481575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 21148266 - 21148222
Alignment:
Q  105 agtccctgtaaaaataataatttagattctgtccttgtaatttca 149  Q
    |||||||||||||| || || ||||||| ||||||||||||||||    
T  21148266 agtccctgtaaaaaaaaaaaattagattttgtccttgtaatttca 21148222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 26136843 - 26136811
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgac 207  Q
    ||||||||||||||||||||||||| |||||||    
T  26136843 tacagggacgtaatttatgcagattatgctgac 26136811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 39808698 - 39808734
Alignment:
Q  108 ccctgtaaaaataataatttagattctgtccttgtaa 144  Q
    ||||||||||| || ||||||||||||||||||||||    
T  39808698 ccctgtaaaaaaaaaaatttagattctgtccttgtaa 39808734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 149
Target Start/End: Complemental strand, 5800982 - 5800891
Alignment:
Q  64 gggttaatactgtttttggtccctgtaatattagcgaattc------agtccctgtaaaaataataatttagattctgtccttgtaatttca 149  Q
    ||||||||||   |||| |||||||||||||||||||||||      |||||||||||||| ||  ||||||||| ||||||||||||||||    
T  5800982 gggttaatacctcttttcgtccctgtaatattagcgaattccggtttagtccctgtaaaaaaaaagatttagattttgtccttgtaatttca 5800891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 5800763 - 5800728
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtg 210  Q
    ||||||||||||||||||||||||||||||||||||    
T  5800763 tacagggacgtaatttatgcagattctgctgacgtg 5800728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 14162029 - 14161994
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtg 210  Q
    ||||||||||||||||||||||||||||||||||||    
T  14162029 tacagggacgtaatttatgcagattctgctgacgtg 14161994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 14262256 - 14262291
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtg 210  Q
    ||||||||||||||||||||||||||||||||||||    
T  14262256 tacagggacgtaatttatgcagattctgctgacgtg 14262291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 52552908 - 52552943
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtg 210  Q
    ||||||||||||||||||||||||||||||||||||    
T  52552908 tacagggacgtaatttatgcagattctgctgacgtg 52552943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 147
Target Start/End: Complemental strand, 36991039 - 36990948
Alignment:
Q  62 tagggttaatactgtttttggtccctgtaatattagcgaa-------ttcagtccctgtaaaaataataatttagattctgtccttgtaattt 147  Q
    |||||||||||||  |||||||||||||||||||||||||       || |||||||||||||| || | |||||||||||||| ||||||||    
T  36991039 tagggttaatactacttttggtccctgtaatattagcgaatttcggttttagtccctgtaaaaa-aaaagtttagattctgtccctgtaattt 36990948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 147
Target Start/End: Complemental strand, 37016479 - 37016388
Alignment:
Q  62 tagggttaatactgtttttggtccctgtaatattagcgaa-------ttcagtccctgtaaaaataataatttagattctgtccttgtaattt 147  Q
    |||||||||||||  |||||||||||||||||||||||||       || |||||||||||||| || | |||||||||||||| ||||||||    
T  37016479 tagggttaatactacttttggtccctgtaatattagcgaatttcggttttagtccctgtaaaaa-aaaagtttagattctgtccctgtaattt 37016388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 32998511 - 32998470
Alignment:
Q  63 agggttaatactgtttttggtccctgtaatattagcgaattc 104  Q
    |||||||||||  |||||||||||||||||||||||||||||    
T  32998511 agggttaataccatttttggtccctgtaatattagcgaattc 32998470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 35740817 - 35740857
Alignment:
Q  64 gggttaatactgtttttggtccctgtaatattagcgaattc 104  Q
    |||||||||||  ||||||||||||||||||||||||||||    
T  35740817 gggttaatactacttttggtccctgtaatattagcgaattc 35740857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 15328618 - 15328583
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtg 210  Q
    |||||||||||||||||||||||||||| |||||||    
T  15328618 tacagggacgtaatttatgcagattctgttgacgtg 15328583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 35741963 - 35741922
Alignment:
Q  63 agggttaatactgtttttggtccctgtaatattagcgaattc 104  Q
    |||||||||||   ||||||||||||||||||||||||||||    
T  35741963 agggttaataccacttttggtccctgtaatattagcgaattc 35741922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 17649230 - 17649262
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgac 207  Q
    |||||||||||||||||||||||||||| ||||    
T  17649230 tacagggacgtaatttatgcagattctgttgac 17649262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 21633054 - 21633022
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgac 207  Q
    |||||||||||||||||||||||||||| ||||    
T  21633054 tacagggacgtaatttatgcagattctgttgac 21633022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 43572437 - 43572481
Alignment:
Q  105 agtccctgtaaaaataataatttagattctgtccttgtaatttca 149  Q
    |||||||||||||| || |||||||||| ||||| ||||||||||    
T  43572437 agtccctgtaaaaagaaaaatttagattttgtccctgtaatttca 43572481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 45970073 - 45970041
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgac 207  Q
    |||||||||||||||||||||||||||| ||||    
T  45970073 tacagggacgtaatttatgcagattctgttgac 45970041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 7126137 - 7126172
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtg 210  Q
    ||||||||||||||||||||||||||||||||||||    
T  7126137 tacagggacgtaatttatgcagattctgctgacgtg 7126172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 27159177 - 27159212
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtg 210  Q
    ||||||||||||||||||||||||||||||||||||    
T  27159177 tacagggacgtaatttatgcagattctgctgacgtg 27159212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 29444964 - 29444929
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtg 210  Q
    ||||||||||||||||||||||||||||||||||||    
T  29444964 tacagggacgtaatttatgcagattctgctgacgtg 29444929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 17762440 - 17762399
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtgcttaaa 216  Q
    |||||||||||||||||||||||||||||| ||||| |||||    
T  17762440 tacagggacgtaatttatgcagattctgcttacgtgattaaa 17762399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 14144059 - 14144015
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtgcttaaatga 219  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||    
T  14144059 tacagggacgtaatttatgcagattctactgacgtgatgaaatga 14144015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 14411855 - 14411820
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtg 210  Q
    ||||||||||||||||||||| ||||||||||||||    
T  14411855 tacagggacgtaatttatgcaaattctgctgacgtg 14411820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 149
Target Start/End: Original strand, 22571076 - 22571169
Alignment:
Q  63 agggttaatactgtttttggtccctgtaatattagcgaattc-------agtccctgtaaaaataataatttagattctgtccttgtaatttca 149  Q
    ||||||||||||| |||| |||| ||||||||||||||||||       |||||||||||||| || |||||||||| | ||  ||||||||||    
T  22571076 agggttaatactgatttttgtccttgtaatattagcgaattccgattttagtccctgtaaaaaaaaaaatttagattatatctctgtaatttca 22571169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 210
Target Start/End: Complemental strand, 24074457 - 24074426
Alignment:
Q  179 gggacgtaatttatgcagattctgctgacgtg 210  Q
    ||||||||||||||||||||||||||||||||    
T  24074457 gggacgtaatttatgcagattctgctgacgtg 24074426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 149
Target Start/End: Original strand, 24837182 - 24837261
Alignment:
Q  77 ttttggtccctgtaatattagcgaattc-------agtccctgtaaaaataataatttagattctgtccttgtaatttca 149  Q
    |||| |||||||||||| ||||||||||       |||||||||||||| ||  ||||||||| ||||||||||||||||    
T  24837182 ttttcgtccctgtaataatagcgaattccggttttagtccctgtaaaaaaaaagatttagattttgtccttgtaatttca 24837261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 149
Target Start/End: Original strand, 29444819 - 29444898
Alignment:
Q  77 ttttggtccctgtaatattagcgaattc-------agtccctgtaaaaataataatttagattctgtccttgtaatttca 149  Q
    |||| ||||||||||||||| |||||||       |||||||||||||| ||  ||||||||| ||||||||||||||||    
T  29444819 ttttcgtccctgtaatattaacgaattctgattttagtccctgtaaaaaaaaggatttagattatgtccttgtaatttca 29444898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 14411995 - 14411952
Alignment:
Q  105 agtccctgtaaaaataataatttagattctgtccttgtaatttca 149  Q
    |||||||||||||| || |||||||||| ||||||||||||||||    
T  14411995 agtccctgtaaaaaaaa-aatttagattttgtccttgtaatttca 14411952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 22571297 - 22571341
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtgcttaaatga 219  Q
    ||||||||||||||||||||||||| || ||||||| | ||||||    
T  22571297 tacagggacgtaatttatgcagattttgttgacgtggtgaaatga 22571341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Original strand, 31799863 - 31799895
Alignment:
Q  178 agggacgtaatttatgcagattctgctgacgtg 210  Q
    |||||||||||||||||| ||||||||||||||    
T  31799863 agggacgtaatttatgcaaattctgctgacgtg 31799895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 9396857 - 9396822
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtg 210  Q
    ||||||||||||||||||||||||||||||||||||    
T  9396857 tacagggacgtaatttatgcagattctgctgacgtg 9396822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 18713118 - 18713083
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtg 210  Q
    ||||||||||||||||||||||||| ||||||||||    
T  18713118 tacagggacgtaatttatgcagattttgctgacgtg 18713083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 34064202 - 34064237
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtg 210  Q
    |||| |||||||||||||||||||||||||||||||    
T  34064202 tacaaggacgtaatttatgcagattctgctgacgtg 34064237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 37012927 - 37012962
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtg 210  Q
    ||||||||||||||||||||||||| ||||||||||    
T  37012927 tacagggacgtaatttatgcagattttgctgacgtg 37012962  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 43312225 - 43312301
Alignment:
Q  80 tggtccctgtaatattagcgaattc-------agtccctgtaaaaataataatttagattctgtccttgtaatttca 149  Q
    ||||||||||||||||||| |||||       |||||||||||||| || |||||| ||||||||| ||||||||||    
T  43312225 tggtccctgtaatattagcaaattccgattttagtccctgtaaaaaaaaaaatttaaattctgtccctgtaatttca 43312301  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 50462776 - 50462734
Alignment:
Q  62 tagggttaatactgtttttggtccctgtaatattagcgaattc 104  Q
    ||||||||||||   ||||||||||||||||||||||||||||    
T  50462776 tagggttaatacctcttttggtccctgtaatattagcgaattc 50462734  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 4356039 - 4355995
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtgcttaaatga 219  Q
    |||| ||||||||||||||||||||||||| ||||| | ||||||    
T  4356039 tacaaggacgtaatttatgcagattctgctaacgtgatgaaatga 4355995  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 26252426 - 26252394
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgac 207  Q
    |||||||||||||||||||||||||||| ||||    
T  26252426 tacagggacgtaatttatgcagattctgttgac 26252394  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 36887679 - 36887719
Alignment:
Q  63 agggttaatactgtttttggtccctgtaatattagcgaatt 103  Q
    |||||||||||   |||||||||||||||||||||||||||    
T  36887679 agggttaatacctcttttggtccctgtaatattagcgaatt 36887719  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 41947076 - 41947108
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgac 207  Q
    |||||||||||||||||||||||||||| ||||    
T  41947076 tacagggacgtaatttatgcagattctgttgac 41947108  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 8292962 - 8292927
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtg 210  Q
    ||||||||||||||||||||||||||||||||||||    
T  8292962 tacagggacgtaatttatgcagattctgctgacgtg 8292927  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 20995827 - 20995792
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtg 210  Q
    ||||||||||||||||||||||||||||||||||||    
T  20995827 tacagggacgtaatttatgcagattctgctgacgtg 20995792  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 43539505 - 43539470
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtg 210  Q
    ||||||||||||||||||||||||||||||||||||    
T  43539505 tacagggacgtaatttatgcagattctgctgacgtg 43539470  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 149
Target Start/End: Complemental strand, 16294325 - 16294233
Alignment:
Q  64 gggttaatactgtttttggtccctgtaatattagcgaattc-------agtccctgtaaaaataataatttagattctgtccttgtaatttca 149  Q
    |||||||||||||||||||||  |||||||||||| ||||        |||||||||||||  || |||||||||| ||||||||||||||||    
T  16294325 gggttaatactgtttttggtctatgtaatattagcaaatttcgattttagtccctgtaaaataaaaaatttagattttgtccttgtaatttca 16294233  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 17500767 - 17500809
Alignment:
Q  62 tagggttaatactgtttttggtccctgtaatattagcgaattc 104  Q
    ||||||||||||  |||||||||||||||||||||||||||||    
T  17500767 tagggttaataccatttttggtccctgtaatattagcgaattc 17500809  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 16294047 - 16294088
Alignment:
Q  62 tagggttaatactgtttttggtccctgtaatattagcgaatt 103  Q
    |||||||||||| | |||||||||||||||||||||||||||    
T  16294047 tagggttaataccgattttggtccctgtaatattagcgaatt 16294088  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 34749325 - 34749366
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtgcttaaa 216  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  34749325 tacagggatgtaatttatgcagattctgctgacgtgattaaa 34749366  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 39711230 - 39711189
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtgcttaaa 216  Q
    |||| ||||||||||||||||||||||||||||||| |||||    
T  39711230 tacaaggacgtaatttatgcagattctgctgacgtgattaaa 39711189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 17606466 - 17606422
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtgcttaaatga 219  Q
    |||||||||||||||||| ||||||||||||||||| | ||||||    
T  17606466 tacagggacgtaatttatacagattctgctgacgtgatgaaatga 17606422  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 4907182 - 4907217
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtg 210  Q
    ||||||||||||||||||||||||||| ||||||||    
T  4907182 tacagggacgtaatttatgcagattctactgacgtg 4907217  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 16294167 - 16294209
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtgcttaaat 217  Q
    ||||||||||||||||||| ||||||||||||| || ||||||    
T  16294167 tacagggacgtaatttatgtagattctgctgacatggttaaat 16294209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 149
Target Start/End: Original strand, 4906975 - 4907054
Alignment:
Q  77 ttttggtccctgtaatattagcgaattc-------agtccctgtaaaaataataatttagattctgtccttgtaatttca 149  Q
    |||| |||||||||||||||| ||||||       |||||||||||||| ||| ||||||||| ||||| ||||||||||    
T  4906975 ttttcgtccctgtaatattagtgaattctagttttagtccctgtaaaaaaaatgatttagattttgtccctgtaatttca 4907054  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 65 - 98
Target Start/End: Original strand, 7473792 - 7473825
Alignment:
Q  65 ggttaatactgtttttggtccctgtaatattagc 98  Q
    ||||||||||||||||||||||| ||||||||||    
T  7473792 ggttaatactgtttttggtccctataatattagc 7473825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 33628910 - 33628951
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtgcttaaa 216  Q
    ||||||||| ||||||||| |||||||||||||||| |||||    
T  33628910 tacagggacataatttatgtagattctgctgacgtgattaaa 33628951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 42510234 - 42510278
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtgcttaaatga 219  Q
    |||||||  ||||||||||||||||||||||||||| | ||||||    
T  42510234 tacaggggtgtaatttatgcagattctgctgacgtgatgaaatga 42510278  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 1250426 - 1250461
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtg 210  Q
    ||||||||||||||||||||||||||| ||||||||    
T  1250426 tacagggacgtaatttatgcagattcttctgacgtg 1250461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 48648449 - 48648484
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgacgtg 210  Q
    |||||||||||||||||||||||||||| |||||||    
T  48648449 tacagggacgtaatttatgcagattctgttgacgtg 48648484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 24195126 - 24195082
Alignment:
Q  105 agtccctgtaaaaataataatttagattctgtccttgtaatttca 149  Q
    |||||||||||||| ||  ||||||||| ||||||||||||||||    
T  24195126 agtccctgtaaaaaaaaagatttagattttgtccttgtaatttca 24195082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 38879944 - 38879976
Alignment:
Q  175 tacagggacgtaatttatgcagattctgctgac 207  Q
    |||||||||||||||||||||||||||| ||||    
T  38879944 tacagggacgtaatttatgcagattctgttgac 38879976  T

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Target: scaffold0220 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 96
Target Start/End: Original strand, 26478 - 26511
Alignment:
Q  63 agggttaatactgtttttggtccctgtaatatta 96  Q
    ||||||||||||||||||||||| ||||||||||    
T  26478 agggttaatactgtttttggtccttgtaatatta 26511  T

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Target: scaffold0809 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Complemental strand, 1565 - 1533
Alignment:
Q  178 agggacgtaatttatgcagattctgctgacgtg 210  Q
    |||||||||||||||| ||||||||||||||||    
T  1565 agggacgtaatttatgtagattctgctgacgtg 1533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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