View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_174 (Length: 214)
Name: NF1318_low_174
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_174 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 28295166 - 28294983
Alignment:
| Q |
1 |
tgcttatgctgattactgataccttcatttacagtttcattggtgggacaatctgcacctcctgaagttttgcagaagctaacatatctcgttataaggc |
100 |
Q |
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| T |
28295166 |
tgcttatgctgattactgataccttcatttacagtttcattggtgggacaatctgcacctcctgaagttttgcagaagctaacatatctcgttataaggc |
28295067 |
T |
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| Q |
101 |
accccggaattcaacgtattgacactgtccgcgcatatacatttggtgttttatattttgtggaggt-atgttgaattttatag |
183 |
Q |
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| T |
28295066 |
accccggaattcaacgtattgacactgtccgcgcatatacatttggtgttttatattttgtggaggtaatgttgaattttatag |
28294983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 32 - 171
Target Start/End: Complemental strand, 32206297 - 32206158
Alignment:
| Q |
32 |
cagtttcattggtgggacaatctgcacctcctgaagttttgcagaagctaacatatctcgttataaggcaccccggaattcaacgtattgacactgtccg |
131 |
Q |
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|||||||| | |||||||||||||||||||||||| || ||||||||||||| ||||| || |||| |||| | |||| | || ||||| ||||| || |
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| T |
32206297 |
cagtttcactagtgggacaatctgcacctcctgaacttctgcagaagctaacgtatcttgtcataatgcactctcaaattaagcgcattgatactgttcg |
32206198 |
T |
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| Q |
132 |
cgcatatacatttggtgttttatattttgtggaggtatgt |
171 |
Q |
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| T |
32206197 |
cgcttactcatttggagttctatacttcgtagaggtatgt |
32206158 |
T |
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