View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_176 (Length: 212)
Name: NF1318_low_176
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_176 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0189 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 21216 - 21103
Alignment:
| Q |
1 |
attaatatcatttagagnnnnnnngaatactatacatatgcggtaaaacaaaaagctttgctctacacattacattgtaataaaagtataaaactatttg |
100 |
Q |
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| T |
21216 |
attaatatcatttagagaaaaaaagaatactatacatatgcggtaaaacaaaaagctttgctctacacattacattgtaataaaagtataaaactatttg |
21117 |
T |
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| Q |
101 |
tgatatagtataat |
114 |
Q |
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|||||||||||||| |
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| T |
21116 |
tgatatagtataat |
21103 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 28395531 - 28395468
Alignment:
| Q |
51 |
aaaagctttgctctacacattacattgtaataaaagtataaaactatttgtgatatagtataat |
114 |
Q |
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|||||| |||||||| || |||||| ||||||| |||||||||||||||||||||||| ||||| |
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| T |
28395531 |
aaaagcattgctctataccttacatagtaataagagtataaaactatttgtgatatagcataat |
28395468 |
T |
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