View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_21 (Length: 567)
Name: NF1318_low_21
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-104; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 242 - 465
Target Start/End: Original strand, 30609302 - 30609525
Alignment:
| Q |
242 |
tgagcaattgttggtttttcttcaatctcctaaattgattttcaagcatgtttaatatcaaaatggtctaaagctaagatcgaaaataacaatgaaaagt |
341 |
Q |
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| T |
30609302 |
tgagcaattgttggtttttcttcaatctcctaaattgattttcaagcatgtttaatatcaaaatggtctaaagctaagatcgaaaataacaatgaaaaat |
30609401 |
T |
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| Q |
342 |
tagaaattaacctagggtaatatatagctctgatatcaaataatagaaatccacaattgatttgagttcttgtnnnnnnnnnctcttatcggtaagaaaa |
441 |
Q |
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| T |
30609402 |
tagaaattaacctagggtaatatatagctctgatatcaaataatagaaatccacaattgatttgagttcttgtaaaaaaaaactcttatcggtaagaaaa |
30609501 |
T |
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| Q |
442 |
atgttttataggacattaatacat |
465 |
Q |
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| T |
30609502 |
atgttttataggacattaatacat |
30609525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 13 - 176
Target Start/End: Original strand, 30609072 - 30609235
Alignment:
| Q |
13 |
aatatcaacatttttgctagttgaattaaaactaaacatggaataaagtattcataaggcttcatgcgattaagttatagaaaatatataacatagttaa |
112 |
Q |
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| T |
30609072 |
aatatcaacatttttgctagttgaactaaagctaatcatgcaataaagtattcataaggcttcatgcgattaagttatagaaaatatataacatagttaa |
30609171 |
T |
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| Q |
113 |
aatgatcttttgtcaattgtcacaaagttctcaattaatctcaatagaattacgaagggttggc |
176 |
Q |
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| T |
30609172 |
aatgatctttggtcaattgtcacaaagttctcaattaatctcaatagaattacgaagggttggc |
30609235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 468 - 526
Target Start/End: Original strand, 30609590 - 30609648
Alignment:
| Q |
468 |
tcataaatatatttgttaaacttcatgctatttttctttttaaggttatttacactttt |
526 |
Q |
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| T |
30609590 |
tcataaatatatttgttaaacttcattctatttttctttttaaggttatttacactttt |
30609648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 439 - 473
Target Start/End: Original strand, 30609551 - 30609585
Alignment:
| Q |
439 |
aaaatgttttataggacattaatacattatcataa |
473 |
Q |
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| T |
30609551 |
aaaatattttataggacattaatacattatcataa |
30609585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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