View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_22 (Length: 552)
Name: NF1318_low_22
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 30 - 543
Target Start/End: Complemental strand, 38342927 - 38342409
Alignment:
| Q |
30 |
gttccaacatctgaaattccaatgcatgaataagagttgacaaattctgcagatagtctcacattggctaatttttt-gctgcaagatgatactgaagag |
128 |
Q |
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| T |
38342927 |
gttccaacatctgaaattccaatgcatgaataagagttgacaaattctgcagatagtcccacattggctaatttttttgctgcaagatgatactgaagag |
38342828 |
T |
|
| Q |
129 |
aaaaatgtaaatacctgannnnnnnccttctgaataagcaaaacattgtattaatatttaataactaaatatcctgtcatcaccacagtccacaagtagt |
228 |
Q |
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| T |
38342827 |
aaaaatgtaaatacctgattttttttcttctgaataagcaaaacattgtattaatatttaataactaaatatcctgtcatcaccacagtccacaagtagt |
38342728 |
T |
|
| Q |
229 |
cctaagaaaggaaagttacagtttgattacacaaatcagtcacattgctgcacactgataaacttctgcactcagcacctcacactacacttataccaaa |
328 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38342727 |
cctaagaaaggaaagttacagtttgattacataaatcagtcacattgctgcacactgataaacttctgcacccagcacctcacactacacttataccaaa |
38342628 |
T |
|
| Q |
329 |
ttcaattacaccactagaagccaaaaaacttctgcggtgtgtagcagaacagaa----ccaagtatgctcacttctttctcaatcaaagaattgtatcca |
424 |
Q |
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||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38342627 |
ttcaattgcaccactccaagccaaaaaacttctgcggtgtgtagcagaacagaaccaaccaagtatgctcacttctttctcaatcaaagaattgtatcca |
38342528 |
T |
|
| Q |
425 |
catagatgcatcttatgaataatcacaatgacacaacttgttgtattaaatatattcaagccatcacagacaattgaattcattacatacctggacctat |
524 |
Q |
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| T |
38342527 |
catagatgcatcttatgaataatcacaatgacacaacttgttgtattaaatatattcaagccatcacagacaattgaattcattacatacccagacctat |
38342428 |
T |
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| Q |
525 |
ttaccacaaccatattctt |
543 |
Q |
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||||||||||||| ||||| |
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| T |
38342427 |
ttaccacaaccattttctt |
38342409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 141
Target Start/End: Complemental strand, 38334248 - 38334142
Alignment:
| Q |
32 |
tccaacatctgaaattccaatgcatgaataagagttgacaaattctgcagatagtctcacattggctaattttttgctgcaagatgatactgaagagaaa |
131 |
Q |
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|||||||||||||||||||| ||||||| | |||||||||||| ||||||||| |||||||||| | |||||| |||||| ||| ||| ||||||| |
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| T |
38334248 |
tccaacatctgaaattccaaggcatgaa---ggcttgacaaattctccagatagtcccacattggctgaccttttgcagcaagacgatgctggagagaaa |
38334152 |
T |
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| Q |
132 |
aatgtaaata |
141 |
Q |
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| T |
38334151 |
gaagtaaata |
38334142 |
T |
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