View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_23 (Length: 549)
Name: NF1318_low_23
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 180 - 471
Target Start/End: Complemental strand, 3587084 - 3586793
Alignment:
| Q |
180 |
tcatatgctcgtgtaacactgtatgggccaaacgtgaaactatgtcaaccacatcaggaggaagttcaagcacattagcagcatcatgggcagcagctcg |
279 |
Q |
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|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3587084 |
tcatatgctcgtgtaacactatacgggccaaacgtgaaactatgtcaaccacatcaggaggaagttcaagcacattagcagcatcatgggcagcagctcg |
3586985 |
T |
|
| Q |
280 |
aaaagtactgaccttattagtggtgccggccctttcggtgaccatatacaagagaacccacaattttcactcacaatagaaaatgaataaaaatggagta |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3586984 |
aaaagtactgaccttattagtggtgccggccctttcggtgaccatttacaagagaacccacaattttcactcacaatagaaaatgaataaaaatggagta |
3586885 |
T |
|
| Q |
380 |
ccaaaagtaccgcatataacctccatcttcacgctccagaagataacacttgaaatttgaacttgaaacttcaactacatgtagtgaaactt |
471 |
Q |
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| T |
3586884 |
ccaaaagtaccgtatataacctccatcttcacgctccagaagataacacttgaaatttgaacttgaaacttcaactacatgtagtgaaactt |
3586793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 3587255 - 3587156
Alignment:
| Q |
11 |
caaaggtacgagaatacaacaattttnnnnnnnttaatatataaatatgtcaatgaaatcatgaattttgttatataatataacatgagagctaaatttt |
110 |
Q |
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| T |
3587255 |
caaaggtacgagaatacaacaattttataaaaattaatatataaatacgtcaatgaaatcatgaattttgttatataatataacatgagagctaaatttt |
3587156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 323 - 369
Target Start/End: Complemental strand, 3574547 - 3574501
Alignment:
| Q |
323 |
atatacaagagaacccacaattttcactcacaatagaaaatgaataa |
369 |
Q |
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| T |
3574547 |
atatacaagagaacccacgattttcactcacaataaaaaatgaataa |
3574501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 28195426 - 28195375
Alignment:
| Q |
66 |
aaatcatgaattttgttatataatataacatgagagctaaatttttcaactt |
117 |
Q |
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| T |
28195426 |
aaatcatgagttttgttatataatataacatgagacctaaattcttcaactt |
28195375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 391
Target Start/End: Original strand, 21979083 - 21979138
Alignment:
| Q |
337 |
ccacaattttcactcacaatagaa-aatgaataaaaatggagtaccaaaagtaccg |
391 |
Q |
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| T |
21979083 |
ccacattttccactcacaatagaataatgagcaaaaatggagtaccaaaagtaccg |
21979138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 101
Target Start/End: Original strand, 35812111 - 35812153
Alignment:
| Q |
59 |
gtcaatgaaatcatgaattttgttatataatataacatgagag |
101 |
Q |
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| T |
35812111 |
gtcaataaaatcatgagttttgttatataatataacatgagag |
35812153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 2703106 - 2703166
Alignment:
| Q |
55 |
atatgtcaatgaaatcatgaattttgttatataatataacatgag-agctaaatttttcaa |
114 |
Q |
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|||||||||| |||||| || |||||||||||||| ||||||||| ||||||||| ||||| |
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| T |
2703106 |
atatgtcaataaaatcacgacttttgttatataatgtaacatgagaagctaaattattcaa |
2703166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 28145079 - 28145037
Alignment:
| Q |
59 |
gtcaatgaaatcatgaattttgttatataatataacatgagag |
101 |
Q |
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|||||| ||||||||| ||||| |||||||||||||||||||| |
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| T |
28145079 |
gtcaataaaatcatgagttttgctatataatataacatgagag |
28145037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 338 - 381
Target Start/End: Complemental strand, 28080420 - 28080376
Alignment:
| Q |
338 |
cacaattttcactcacaatagaa-aatgaataaaaatggagtacc |
381 |
Q |
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||||||||||||||||||||||| |||||| ||||||| |||||| |
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| T |
28080420 |
cacaattttcactcacaatagaataatgaacaaaaatgaagtacc |
28080376 |
T |
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