View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_26 (Length: 545)
Name: NF1318_low_26
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 472; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 29 - 536
Target Start/End: Complemental strand, 34349064 - 34348552
Alignment:
| Q |
29 |
aaaaacgagcattaatatgtgattaaaaaacacacttagcttaattttgcttttagtactacaaatacttatgagttatgattgttacagcttgtagttt |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34349064 |
aaaaacgagcattaatatgtgattaaaaaacacacttagcttaattttgcttttagtactacaaatacttatgagttatgattgttacagcttgtagttt |
34348965 |
T |
|
| Q |
129 |
tgtctttctttagctttaagaaagaatgcactggaaattttttattctgataccatatta----ctaatatatctcatttatt-gataacttgatcaaat |
223 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
34348964 |
tgtctttctttagctttcagaaagaatgcactggaaattttttattctgataccatattaattactaatatatctcatttatttgataacttgatcaaat |
34348865 |
T |
|
| Q |
224 |
cattgaactatatttatttgaacaaatgattcttgtgaatgtataaaaggtgtcatgtgtcatttttgtcgaaatttcggtctctaaagcctaaaatgaa |
323 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34348864 |
cattgaactatatttatttgagcaaatgattcttgtgaatgtataaaaggtgtcatgtgtcatttttgtcgaaatttcggtctctaaagcctaaaatgaa |
34348765 |
T |
|
| Q |
324 |
aatgatcaattggaaaattatattggcagctatcatgcaaatgctctggaggtggagatgcacatgcgtcaacaatggtgttactgaattacctatctag |
423 |
Q |
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| T |
34348764 |
aatgatcaattggaaaattatattggcagctatcttgcaaatgctctggaggtggagatgcacatgcgtcaacaatggtgttactgaattacctatctag |
34348665 |
T |
|
| Q |
424 |
ctacccatggcatgcaaaagttgtgttaaccttagcagcatttgctgttatttttggagagttttggcttgttgctcaatcaagtgtttcaaacacactt |
523 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34348664 |
ctacccatggcatgcaaaagttgtgttaaccttagcagcatttgctgttatttttggagagttttggcttgttgctcaatcaagtgtttcaaacacactt |
34348565 |
T |
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| Q |
524 |
gccaaatctgtgg |
536 |
Q |
| |
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|| |||||||||| |
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| T |
34348564 |
gcaaaatctgtgg |
34348552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 35446842 - 35446882
Alignment:
| Q |
181 |
ccatattactaatatatctcatttattgataacttgatcaa |
221 |
Q |
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|||||||| | | |||||||||||||||||||||||||||| |
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| T |
35446842 |
ccatattagtcacatatctcatttattgataacttgatcaa |
35446882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 37067892 - 37067929
Alignment:
| Q |
184 |
tattactaatatatctcatttattgataacttgatcaa |
221 |
Q |
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||||||||| |||||||||||||||||||||||||||| |
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| T |
37067892 |
tattactaaaatatctcatttattgataacttgatcaa |
37067929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 37060416 - 37060449
Alignment:
| Q |
184 |
tattactaatatatctcatttattgataacttga |
217 |
Q |
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||||||||| |||||||||||||||||||||||| |
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| T |
37060416 |
tattactaaaatatctcatttattgataacttga |
37060449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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