View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1318_low_27 (Length: 544)

Name: NF1318_low_27
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1318_low_27
NF1318_low_27
[»] chr1 (2 HSPs)
chr1 (118-537)||(51119368-51119803)
chr1 (336-426)||(25590744-25590835)
[»] chr3 (2 HSPs)
chr3 (217-486)||(1663250-1663529)
chr3 (360-438)||(51810551-51810630)
[»] chr4 (8 HSPs)
chr4 (217-442)||(28964694-28964917)
chr4 (227-427)||(7043244-7043448)
chr4 (336-441)||(11494107-11494213)
chr4 (336-441)||(9881272-9881378)
chr4 (359-441)||(32347602-32347683)
chr4 (359-427)||(26905394-26905461)
chr4 (335-422)||(25170244-25170330)
chr4 (359-425)||(24520783-24520848)
[»] chr2 (4 HSPs)
chr2 (353-487)||(12635115-12635250)
chr2 (225-287)||(12644630-12644692)
chr2 (336-427)||(40498002-40498092)
chr2 (355-444)||(6962116-6962206)
[»] chr6 (1 HSPs)
chr6 (336-427)||(29010837-29010928)
[»] chr8 (1 HSPs)
chr8 (336-452)||(26794267-26794384)
[»] chr5 (2 HSPs)
chr5 (429-487)||(40905516-40905574)
chr5 (336-375)||(14234156-14234195)
[»] chr7 (1 HSPs)
chr7 (359-488)||(8265811-8265942)
[»] scaffold0019 (1 HSPs)
scaffold0019 (336-427)||(59489-59579)


Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 118 - 537
Target Start/End: Complemental strand, 51119803 - 51119368
Alignment:
Q  118 aataataccatcagactaaaagattnnnnnnn-tcaactttcatctcataaaactttaatggcgtctatgtttcagaattatattcttttctctctgtta 216  Q
    |||||||||||||||||||||||||        |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  51119803 aataataccatcagactaaaagatttaaaaaaatcaactttcatctcataaaactttaatgacgtctatgtttcacaattatattcttttctctctgtta 51119704  T
Q  217 gatcaaa-----------atgcgcaacataagtgcttttcataataagctgtttcaagcaagatgagaaaataacaaacaaacttgtaaaactgagagaa 305  Q
    |||||||           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51119703 gatcaaactatgatcaaaatgcgcaacataagtgtttttcataataagctgtttcaagcaagatgagaaaataacaaacaaacttgtaaaactgagagaa 51119604  T
Q  306 tagagaatggagagtttacttgtaattgttaatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagca 405  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51119603 tagagaatgaagagtttacttgtaattgttaatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagca 51119504  T
Q  406 caagctatctaactaac----taacacgttttgtaacaaaattctaactaatttgttacatgggagttatggattaaatcttaacactctcttcaacaac 501  Q
    |||||||||||||||||    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  51119503 caagctatctaactaactaactaacacgttttgtaacaaaattctaactaacttgttacatgggagttatgaattaaatcttaacactctcttcaacaac 51119404  T
Q  502 acttcttcatgtctttctgttttgtttttcatctca 537  Q
    ||||||||||||||||||||||||||||||||||||    
T  51119403 acttcttcatgtctttctgttttgtttttcatctca 51119368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 426
Target Start/End: Original strand, 25590744 - 25590835
Alignment:
Q  336 aatctcattaagaattaaatgtacacattacaaagccttt-tatatgcaaatataacacttacttgtagcacaagctatctaactaactaac 426  Q
    |||||||||||||| | ||||||||| ||||||||||||| |||| |||||  |||||||| |||||| || || |||||| ||||||||||    
T  25590744 aatctcattaagaagtgaatgtacacgttacaaagcctttatataagcaaaactaacacttgcttgtaacataacctatctcactaactaac 25590835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 144; Significance: 2e-75; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 217 - 486
Target Start/End: Complemental strand, 1663529 - 1663250
Alignment:
Q  217 gatcaaaatgcgcaacataagtgcttttcataataagctgtttcaagcaagatgagaaaataacaaacaaacttgtaaaactgagagaatagagaatgga 316  Q
    |||||| ||| | ||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||| ||||| |||  ||||||||||    
T  1663529 gatcaatatgtgtaacataagtgcttttcagaataagctggtttaagcaagatgagaaaataacaaacaaacttgtaagactgacagagaagagaatgga 1663430  T
Q  317 gag--tttacttgtaattgttaatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatc 414  Q
    |||  ||| ||||||||||| |||||||||||||||| ||||||||| |||||||| |||| ||| |||||||||||||||  |||||||||||||||||    
T  1663429 gagagtttgcttgtaattgtgaatctcattaagaattgaatgtacaccttacaaagactttcataggcaaatataacacttgtttgtagcacaagctatc 1663330  T
Q  415 taac--------taactaacacgttttgtaacaaaattctaactaatttgttacatgggagttatggattaaatcttaac 486  Q
    ||||        ||||||| | |||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||    
T  1663329 taactaacaaactaactaagaagttttgtaacaaaattctaactaacttgctacatggcagttatggattaaatcttaac 1663250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 438
Target Start/End: Complemental strand, 51810630 - 51810551
Alignment:
Q  360 acattacaaagccttt-tatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttgtaac 438  Q
    |||||||||||||||| |||| |||||  ||||| || ||||||||||||||||||| ||| | ||||  ||||||||||    
T  51810630 acattacaaagcctttatataggcaaaactaacatttgcttgtagcacaagctatctcactgattaactagttttgtaac 51810551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 4e-61; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 217 - 442
Target Start/End: Original strand, 28964694 - 28964917
Alignment:
Q  217 gatcaaaatgcgcaacataagtgcttttcataataagctgtttcaagcaagatgagaaaataacaaacaaacttgtaaaactgagagaatagagaatgga 316  Q
    |||||||||||||||||||||||||||||   ||||||||||| ||| ||||||||||| ||||||||    ||||||||||||||||  ||||||||||    
T  28964694 gatcaaaatgcgcaacataagtgcttttctagataagctgttttaagtaagatgagaaattaacaaac----ttgtaaaactgagagagaagagaatgga 28964789  T
Q  317 gag--tttacttgtaattgttaatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatc 414  Q
    |||  ||| ||||||||||| |||||||||||||||| |||| |||||||||||||||||||||| ||||||| ||||||| ||||||| ||||||||||    
T  28964790 gagagtttgcttgtaattgtgaatctcattaagaattgaatgcacacattacaaagccttttataagcaaatacaacacttgcttgtagtacaagctatc 28964889  T
Q  415 taactaactaacacgttttgtaacaaaa 442  Q
    |||||||| ||||  |||||||| ||||    
T  28964890 taactaacaaacaaattttgtaagaaaa 28964917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 227 - 427
Target Start/End: Original strand, 7043244 - 7043448
Alignment:
Q  227 cgcaacataagtgcttttcataataagctgtttcaagcaagatgagaaaataacaaacaaacttgtaaaactgaga--gaatagagaatggagag--ttt 322  Q
    |||| ||||||||||||||  |||||| ||||| ||||||||||| | |||||||||||||  |||  || | |||  ||  |||||||||||||  |||    
T  7043244 cgcagcataagtgcttttctcaataagttgttttaagcaagatga-agaataacaaacaaaactgttgaagttagaaagagaagagaatggagagagttt 7043342  T
Q  323 acttgtaattgttaatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatata--acacttacttgtagcacaagctatctaacta 420  Q
     ||||||||  | ||||||||||||   | ||||||||||||||| ||||||||||| | | |||||  |||||| ||||||||||||||||||||||||    
T  7043343 gcttgtaata-tgaatctcattaagttgtgaatgtacacattacatagccttttataggtatatatatcacacttgcttgtagcacaagctatctaacta 7043441  T
Q  421 actaaca 427  Q
    |||||||    
T  7043442 actaaca 7043448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 336 - 441
Target Start/End: Complemental strand, 11494213 - 11494107
Alignment:
Q  336 aatctcattaagaattaaatgtacacattacaaagcct-tttatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttg 434  Q
    |||||||||||||| | ||||||||||||||||||||| | |||| |||||  ||| |||| |||||||||||| |||||| || |||||||  ||||||    
T  11494213 aatctcattaagaagtgaatgtacacattacaaagcctatatataggcaaaactaatacttgcttgtagcacaaactatctcacaaactaactagttttg 11494114  T
Q  435 taacaaa 441  Q
    |||||||    
T  11494113 taacaaa 11494107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 336 - 441
Target Start/End: Complemental strand, 9881378 - 9881272
Alignment:
Q  336 aatctcattaagaattaaatgtacacattacaaagcc-ttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttg 434  Q
    |||||||||||| | | |||||||||||||||||||| || |||| |||||  |||||||| ||||||| |||||||| ||   ||||||||  ||||||    
T  9881378 aatctcattaagtagtgaatgtacacattacaaagccgttatataggcaaaactaacactttcttgtagaacaagctaactccataactaactagttttg 9881279  T
Q  435 taacaaa 441  Q
    |||||||    
T  9881278 taacaaa 9881272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 359 - 441
Target Start/End: Original strand, 32347602 - 32347683
Alignment:
Q  359 cacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttgtaacaaa 441  Q
    |||| |||||||||||||||| ||| | ||| ||||| ||||||| |||||||||||||||||||||||  ||||| ||||||    
T  32347602 cacaatacaaagccttttataggcaca-atatcacttgcttgtagaacaagctatctaactaactaacaaattttgaaacaaa 32347683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 427
Target Start/End: Complemental strand, 26905461 - 26905394
Alignment:
Q  359 cacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaaca 427  Q
    |||| |||||||||||||||| ||| | ||| ||||| ||| ||| |||||||||||||||||||||||    
T  26905461 cacaatacaaagccttttataggcata-atagcacttgcttttagaacaagctatctaactaactaaca 26905394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 422
Target Start/End: Complemental strand, 25170330 - 25170244
Alignment:
Q  335 taatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaac 422  Q
    |||||||||||||| || ||  | |||| |||||||||||||||| ||| | ||| ||||| ||||||| |||| |||||||||||||    
T  25170330 taatctcattaagacttgaagtttcacaatacaaagccttttataggcaca-atatcacttgcttgtagaacaatctatctaactaac 25170244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 425
Target Start/End: Original strand, 24520783 - 24520848
Alignment:
Q  359 cacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaa 425  Q
    |||| |||||||||||||||| ||| | ||| ||||| ||||||| ||||||| |||||||||||||    
T  24520783 cacaatacaaagccttttataggcaca-atatcacttgcttgtagaacaagctgtctaactaactaa 24520848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 353 - 487
Target Start/End: Complemental strand, 12635250 - 12635115
Alignment:
Q  353 aatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttgt-aacaaaattctaacta 451  Q
    ||||||||||||||||||||||||||| | ||||||||||||| ||||||||| ||| ||||| ||||||||||| ||||||| || ||||||||||| |    
T  12635250 aatgtacacattacaaagccttttataggaaaatataacacttgcttgtagcataagttatctcactaactaacaagttttgtaaaaaaaattctaacca 12635151  T
Q  452 atttgttacatgggagttatggattaaatcttaaca 487  Q
    | ||| ||  ||| ||||||| ||||| ||||||||    
T  12635150 acttgctatgtggcagttatgtattaactcttaaca 12635115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 225 - 287
Target Start/End: Complemental strand, 12644692 - 12644630
Alignment:
Q  225 tgcgcaacataagtgcttttcataataagctgtttcaagcaagatgagaaaataacaaacaaa 287  Q
    |||||||||||||||| ||||| |||||| |||||| |||||||||||||||||  |||||||    
T  12644692 tgcgcaacataagtgcctttcaaaataagttgtttcgagcaagatgagaaaatagaaaacaaa 12644630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 336 - 427
Target Start/End: Complemental strand, 40498092 - 40498002
Alignment:
Q  336 aatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaaca 427  Q
    |||||||||||||||||||  | |||| |||||||||||||||||||| | ||| ||||| |  |||| |||||| ||||||| ||||||||    
T  40498092 aatctcattaagaattaaagttgcacaatacaaagccttttatatgcaca-atagcacttgccggtagaacaagcaatctaacaaactaaca 40498002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 444
Target Start/End: Complemental strand, 6962206 - 6962116
Alignment:
Q  355 tgtacacattacaaagccttt-tatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttgtaacaaaatt 444  Q
    ||||||||||||||||||||| |||| |||||  |||||||| ||||||| ||||| |  ||  |||||||||  ||||||||||||||||    
T  6962206 tgtacacattacaaagcctttatataggcaaaattaacacttgcttgtagaacaagatgacttcctaactaactagttttgtaacaaaatt 6962116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 336 - 427
Target Start/End: Original strand, 29010837 - 29010928
Alignment:
Q  336 aatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaaca 427  Q
    |||||||||||||| | ||||||||||||||||||||||||||| |||||||| |  ||| ||||||||||||||||||| |||||||||||    
T  29010837 aatctcattaagaagtgaatgtacacattacaaagccttttataggcaaatatgatgcttgcttgtagcacaagctatctcactaactaaca 29010928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 336 - 452
Target Start/End: Original strand, 26794267 - 26794384
Alignment:
Q  336 aatctcattaagaattaaatgtacacattacaaagccttt-tatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttg 434  Q
    |||||||||||||| | ||||||||||||||||||||||| |||| |||||  |||||||| ||||||| |||||||| ||  |||||||||  ||||||    
T  26794267 aatctcattaagaagtgaatgtacacattacaaagcctttatataggcaaaactaacacttgcttgtagaacaagctaactccctaactaactagttttg 26794366  T
Q  435 taacaaaattctaactaa 452  Q
    |||||||||  |||||||    
T  26794367 taacaaaatcttaactaa 26794384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 429 - 487
Target Start/End: Complemental strand, 40905574 - 40905516
Alignment:
Q  429 gttttgtaacaaaattctaactaatttgttacatgggagttatggattaaatcttaaca 487  Q
    |||||||||||||||||||||||| ||| ||||||| |||||| |||||||||||||||    
T  40905574 gttttgtaacaaaattctaactaacttgctacatggcagttatagattaaatcttaaca 40905516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 375
Target Start/End: Complemental strand, 14234195 - 14234156
Alignment:
Q  336 aatctcattaagaattaaatgtacacattacaaagccttt 375  Q
    |||||||||||||| | |||||||||||||||||||||||    
T  14234195 aatctcattaagaagtgaatgtacacattacaaagccttt 14234156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 359 - 488
Target Start/End: Complemental strand, 8265942 - 8265811
Alignment:
Q  359 cacattacaaagccttt-tatatgcaaatataacacttacttgtagcacaagctatctaactaactaacacgttttgtaacaaaattctaactaatttg- 456  Q
    ||||||||||||||||| |||| |||||  |||||||| ||||||| |||||||| ||  |||||||||  ||||| |||||||||   |||||| |||     
T  8265942 cacattacaaagcctttatataggcaaaactaacactttcttgtagaacaagctaacttcctaactaactagttttctaacaaaatctcaactaacttgc 8265843  T
Q  457 ttacatgggagttatggattaaatcttaacac 488  Q
    |||  ||| ||||||| ||||| |||||||||    
T  8265842 ttaggtggcagttatgaattaattcttaacac 8265811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 427
Target Start/End: Original strand, 59489 - 59579
Alignment:
Q  336 aatctcattaagaattaaatgtacacattacaaagccttttatatgcaaatataacacttacttgtagcacaagctatctaactaactaaca 427  Q
    ||||||||||||| || ||  | |||| |||||||||||||||| ||| | ||  ||||| ||||||| ||||||||| |||||||||||||    
T  59489 aatctcattaagacttgaagttgcacaatacaaagccttttataggcaca-atggcacttgcttgtagaacaagctatttaactaactaaca 59579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University