View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1318_low_36 (Length: 469)
Name: NF1318_low_36
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 424; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 28 - 459
Target Start/End: Complemental strand, 1093108 - 1092677
Alignment:
| Q |
28 |
caattacctctacacgtcgagctggattgttgtgtatgtctttgaggtctatgatgggaatactcaacttggactcactagctgagtcttcggagatttc |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1093108 |
caattacctctacacgtcgagctggattgttgtgtatgtctttgaggtctatgatgggaatactcaacttggactcactagctgagtcttcggagatttc |
1093009 |
T |
|
| Q |
128 |
catcttcccagtatggaacatgcgtggaatcttcgacaccccagactccaccaaacctttgacacctacttttgaatcatcaaaagctttcacttcagct |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1093008 |
catcttcccagtatggaacatgcgtggaattttcgacaccccagactccaccaaacctttgacacctacttttgaatcatcaaaagctttcacttcagct |
1092909 |
T |
|
| Q |
228 |
tctctatcataagtggaattagtggtttcctctaattggtttgtgtttttcaccaccatgttgagagggagaaacaacaccagaatagaagtgtattatg |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
1092908 |
tctctatcataagtggaattagtggtttcctctaattggtttgtgtttttcaccaccatgttgagagggagaaacaacaccagaatggaagtgtattatg |
1092809 |
T |
|
| Q |
328 |
actctaacaaagcatggaattactacctatagaattggacaggagagaacattaaaatagactgggcaaagaagaccaatgtattaaaattacacaaata |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1092808 |
actctaacaaagcatggaattactacctatagaattggacaggagagaacattaaaatagactgggcaaagaagaccaatgtattaaaattacacaaata |
1092709 |
T |
|
| Q |
428 |
gtaaagaaataaatgtgattgttttgtctctg |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
1092708 |
gtaaagaaataaatgtgattgttttgtctctg |
1092677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 246
Target Start/End: Original strand, 25225067 - 25225169
Alignment:
| Q |
144 |
aacatgcgtggaatcttcgacaccccagactccaccaaacctttgacacctacttttgaatcatcaaaagctttcacttcagcttctctatcataagtgg |
243 |
Q |
| |
|
|||||||| || ||||| | ||||||| ||||| | |||| | ||||| | ||| |||||||||||||||||||||||| | | ||||||||| |||| |
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|
| T |
25225067 |
aacatgcgcgggatctttgtcaccccacgctccataagacctctaacaccaagtttcgaatcatcaaaagctttcacttcaacatttctatcatatgtgg |
25225166 |
T |
|
| Q |
244 |
aat |
246 |
Q |
| |
|
||| |
|
|
| T |
25225167 |
aat |
25225169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 246
Target Start/End: Complemental strand, 26168315 - 26168213
Alignment:
| Q |
144 |
aacatgcgtggaatcttcgacaccccagactccaccaaacctttgacacctacttttgaatcatcaaaagctttcacttcagcttctctatcataagtgg |
243 |
Q |
| |
|
||||||||||| ||||| | ||||||| ||||| | |||| | ||||| | |||||||||||||||| |||||| |||| | | ||||||||| |||| |
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|
| T |
26168315 |
aacatgcgtgggatctttgtcaccccacgctccataagacctcttacaccaagttttgaatcatcaaaaactttcaattcatcatttctatcatatgtgg |
26168216 |
T |
|
| Q |
244 |
aat |
246 |
Q |
| |
|
||| |
|
|
| T |
26168215 |
aat |
26168213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 224
Target Start/End: Complemental strand, 26395926 - 26395846
Alignment:
| Q |
144 |
aacatgcgtggaatcttcgacaccccagactccaccaaacctttgacacctacttttgaatcatcaaaagctttcacttca |
224 |
Q |
| |
|
||||||||||| ||||| | |||||| |||||| | |||| | ||||| |||||||| || |||||||||||||||||| |
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|
| T |
26395926 |
aacatgcgtgggatctttgttaccccactctccacaagacctcttacaccaacttttgattcttcaaaagctttcacttca |
26395846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 154; Significance: 2e-81; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 27 - 319
Target Start/End: Complemental strand, 29462845 - 29462555
Alignment:
| Q |
27 |
tcaattacctctacacgtcgagctggattgttgtgtatgtctttgaggtctatgatgggaatactcaacttggactcactagctgagtcttcggagattt |
126 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||| ||||||||||||| ||| ||||||||||||||||| |||||||||| | ||| ||||||| |
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|
| T |
29462845 |
tcaattacctctacacgctgagctggattgatgtgtatatctttgaggtctacgataggaatactcaacttggagtcactagctgtgctttcagagattt |
29462746 |
T |
|
| Q |
127 |
ccatcttcccagtatggaacatgcgtggaatcttcgacaccccagactccaccaaacctttgacacctacttttgaatcatcaaaagctttcacttcagc |
226 |
Q |
| |
|
||| ||||| ||| | |||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| || |
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|
| T |
29462745 |
ccaacttcctagtgtagaacatgcgtggaatctttgacaccccagaatccaccaaacctttgacaccaacttttgaatcatcaaaagctttaacttcggc |
29462646 |
T |
|
| Q |
227 |
ttctctatcataagtggaattagtggtttcctctaattggtttgtgtttttcaccaccatgttgagagggagaaacaacaccagaatagaagt |
319 |
Q |
| |
|
|||||||||||||||| ||| | ||| ||||| ||||||||||| ||||| |||||||| |||| ||| |||||||||||||||| |||| |
|
|
| T |
29462645 |
ttctctatcataagtgaaatcactggattcctttaattggtttgagttttctaccaccatattgatagg--caaacaacaccagaataaaagt |
29462555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 27 - 315
Target Start/End: Complemental strand, 19890457 - 19890171
Alignment:
| Q |
27 |
tcaattacctctacacgtcgagctggattgttgtgtatgtctttgaggtctatgatgggaatactcaacttggactcactagctgagtcttcggagattt |
126 |
Q |
| |
|
||||||||||| ||||| ||||| ||| | ||||||| ||||||||||||| |||||||| |||||| || || |||||||| |||| ||| ||| | |
|
|
| T |
19890457 |
tcaattacctcgacacgctgagcttgatcgatgtgtatatctttgaggtctacgatgggaacactcaatttagaatcactagccgagttttcaccgatat |
19890358 |
T |
|
| Q |
127 |
ccatcttcccagtatggaacatgcgtggaatcttcgacaccccagactccaccaaacctttgacacctacttttgaatcatcaaaagctttcacttcagc |
226 |
Q |
| |
|
||| ||| || ||||| || ||||| || ||||| ||||||||| ||||||||||||| ||||||| ||||||||||||||||| ||||||||| | |
|
|
| T |
19890357 |
ccaacttaccggtatgaaaaatgcgcgggatctttgacaccccatgctccaccaaacctctgacaccagcttttgaatcatcaaaatttttcacttctgt |
19890258 |
T |
|
| Q |
227 |
ttctctatcataagtggaattagtggtttcctctaattggtttgtgtttttcaccaccatgttgagagggagaaacaacaccagaatag |
315 |
Q |
| |
|
|| ||||||||||||||||||||| | ||||||||| || ||||||||||| |||||||| |||||||| ||||||||||| ||||| |
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|
| T |
19890257 |
ttttctatcataagtggaattagtagattcctctaactgatttgtgttttttaccaccatattgagagg--aaaacaacaccaaaatag |
19890171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 28 - 294
Target Start/End: Complemental strand, 19844599 - 19844333
Alignment:
| Q |
28 |
caattacctctacacgtcgagctggattgttgtgtatgtctttgaggtctatgatgggaatactcaacttggactcactagctgagtcttcggagatttc |
127 |
Q |
| |
|
||||||||||| |||| ||| ||||||| ||| ||| |||||||||| |||||||||||| ||||||| || |||| | ||| | | | || || |
|
|
| T |
19844599 |
caattacctcttcacgcagagttggattgatgtctatacctttgaggtcaatgatgggaatattcaacttagagtcacaaattgactttgtagcaatgtc |
19844500 |
T |
|
| Q |
128 |
catcttcccagtatggaacatgcgtggaatcttcgacaccccagactccaccaaacctttgacacctacttttgaatcatcaaaagctttcacttcagct |
227 |
Q |
| |
|
|| | || || |||||||||| |||| ||||||||||| || ||||||||||||||| | ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19844499 |
caacatctcattatggaacatctgtgggatcttcgacactccggactccaccaaacctctcacaccagcttttgaatcatcaaaagctttcacttcattg |
19844400 |
T |
|
| Q |
228 |
tctctatcataagtggaattagtggtttcctctaattggtttgtgtttttcaccaccatgttgagag |
294 |
Q |
| |
|
| ||||||||||||||||||||||| || |||| |||||||| |||||| |||||||| ||||||| |
|
|
| T |
19844399 |
tatctatcataagtggaattagtggatttttctacttggtttgagttttttaccaccatattgagag |
19844333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 9e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 29 - 315
Target Start/End: Original strand, 49465338 - 49465622
Alignment:
| Q |
29 |
aattacctctacacgtcgagctggattgttgtgtatgtctttgaggtctatgatgggaatactcaacttggactcactagctgagtcttcggagatttcc |
128 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||||||| || |||| |||||||||||| |||| || ||||| ||| ||| ||| |
|
|
| T |
49465338 |
aattacatctacacgttgagctggattgttgtgtatgtctttgaggtctacaatcggaacactcaacttggagtcacaagttgagttttcaccgatgtcc |
49465437 |
T |
|
| Q |
129 |
atcttcccagtatggaacatgcgtggaatcttcgacaccccagactccaccaaacctttgacacctacttttgaatcatcaaaagctttcacttcagctt |
228 |
Q |
| |
|
| |||||| | |||||| | |||||| ||||| || ||||||||||| |||||||| ||||| ||| || ||||||||||||||||||||||||||||| |
|
|
| T |
49465438 |
aacttcccggcatggaaaaagcgtgggatctttgaaaccccagactcaaccaaaccattgacgcctgctcgtgaatcatcaaaagctttcacttcagctt |
49465537 |
T |
|
| Q |
229 |
ctctatcataagtggaattagtggtttcctctaattggtttgtgtttttcaccaccatgttgagagggagaaacaacaccagaatag |
315 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||| ||||||||||| ||||||||||||||| | ||||||| |||||||||| |
|
|
| T |
49465538 |
ttctatcataagtggaatcagtggcttcctctaattgatttgtgttttttaccaccatgttgagaag--gaaacaaaaccagaatag |
49465622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 144 - 246
Target Start/End: Complemental strand, 8349072 - 8348970
Alignment:
| Q |
144 |
aacatgcgtggaatcttcgacaccccagactccaccaaacctttgacacctacttttgaatcatcaaaagctttcacttcagcttctctatcataagtgg |
243 |
Q |
| |
|
||||||||||| ||||| | |||||| ||||| | |||| | ||||| | |||||||||||||||||||||||||||||| | ||||||||| |||| |
|
|
| T |
8349072 |
aacatgcgtgggatctttgttaccccacgctccataagacctctaacaccaagttttgaatcatcaaaagctttcacttcagcatttctatcatatgtgg |
8348973 |
T |
|
| Q |
244 |
aat |
246 |
Q |
| |
|
||| |
|
|
| T |
8348972 |
aat |
8348970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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