View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_41 (Length: 460)
Name: NF1318_low_41
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 9e-74; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 124 - 272
Target Start/End: Original strand, 22778722 - 22778870
Alignment:
| Q |
124 |
atataatagtgacggaatgcaaaaacacacacacatgcatacatatatatcggtatcagacaaaaatgtgttacctctataacatctccaacattgataa |
223 |
Q |
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| T |
22778722 |
atataatagtgacggaatgcaaaaacacacacacatgcatacctatatattggtatcagacaaaaatgtgttacctctataacatctccaacattgataa |
22778821 |
T |
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| Q |
224 |
ctagagcatctgatattggtttaaccggtacccaatttcctttgtttct |
272 |
Q |
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| T |
22778822 |
ctagagcatctgatattggtttaaccggtacccaatttcctttgtttct |
22778870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 195 - 271
Target Start/End: Original strand, 22766121 - 22766197
Alignment:
| Q |
195 |
tacctctataacatctccaacattgataactagagcatctgatattggtttaaccggtacccaatttcctttgtttc |
271 |
Q |
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| T |
22766121 |
tacctctataacatctccaacattgacaacaagagcatctgatattggaataactggaacccaatttcctttgtttc |
22766197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 194 - 266
Target Start/End: Original strand, 22775637 - 22775709
Alignment:
| Q |
194 |
ttacctctataacatctccaacattgataactagagcatctgatattggtttaaccggtacccaatttccttt |
266 |
Q |
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| T |
22775637 |
ttacctctattacatctccgacattgacaactagagcatctgatattggagtaacgggtacccaatttccttt |
22775709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 194 - 268
Target Start/End: Complemental strand, 16084250 - 16084176
Alignment:
| Q |
194 |
ttacctctataacatctccaacattgataactagagcatctgatattggtttaaccggtacccaatttcctttgt |
268 |
Q |
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| T |
16084250 |
ttacctctattgcatctccaacattgacaactagagcatctgctatgggagttaccggtacccaatttcctttgt |
16084176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 195 - 268
Target Start/End: Complemental strand, 23278182 - 23278109
Alignment:
| Q |
195 |
tacctctataacatctccaacattgataactagagcatctgatattggtttaaccggtacccaatttcctttgt |
268 |
Q |
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||||||||| |||||||||| ||||| |||| ||||| || |||||| |||| ||||||||||||||||||| |
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| T |
23278182 |
tacctctattacatctccaagattgaccactaaagcatttggtattggattaattggtacccaatttcctttgt |
23278109 |
T |
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