View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_42 (Length: 460)
Name: NF1318_low_42
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 124 - 272
Target Start/End: Original strand, 22778722 - 22778870
Alignment:
| Q |
124 |
atataatagtgacggaatgcaaaaacacacacacatgcatacatatatatcggtatcagacaaaaatgtgttacctctataacatctccaacattgataa |
223 |
Q |
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| T |
22778722 |
atataatagtgacggaatgcaaaaacacacacacatgcatacctatatattggtatcagacaaaaatgtgttacctctataacatctccaacattgataa |
22778821 |
T |
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| Q |
224 |
ctagagcatctgatattggtttaaccggtacccaatttcctttgcttct |
272 |
Q |
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| T |
22778822 |
ctagagcatctgatattggtttaaccggtacccaatttcctttgtttct |
22778870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 195 - 267
Target Start/End: Original strand, 22766121 - 22766193
Alignment:
| Q |
195 |
tacctctataacatctccaacattgataactagagcatctgatattggtttaaccggtacccaatttcctttg |
267 |
Q |
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| T |
22766121 |
tacctctataacatctccaacattgacaacaagagcatctgatattggaataactggaacccaatttcctttg |
22766193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 194 - 266
Target Start/End: Original strand, 22775637 - 22775709
Alignment:
| Q |
194 |
ttacctctataacatctccaacattgataactagagcatctgatattggtttaaccggtacccaatttccttt |
266 |
Q |
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| T |
22775637 |
ttacctctattacatctccgacattgacaactagagcatctgatattggagtaacgggtacccaatttccttt |
22775709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 16084250 - 16084177
Alignment:
| Q |
194 |
ttacctctataacatctccaacattgataactagagcatctgatattggtttaaccggtacccaatttcctttg |
267 |
Q |
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| T |
16084250 |
ttacctctattgcatctccaacattgacaactagagcatctgctatgggagttaccggtacccaatttcctttg |
16084177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 267
Target Start/End: Complemental strand, 23278182 - 23278110
Alignment:
| Q |
195 |
tacctctataacatctccaacattgataactagagcatctgatattggtttaaccggtacccaatttcctttg |
267 |
Q |
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||||||||| |||||||||| ||||| |||| ||||| || |||||| |||| |||||||||||||||||| |
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| T |
23278182 |
tacctctattacatctccaagattgaccactaaagcatttggtattggattaattggtacccaatttcctttg |
23278110 |
T |
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