View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_46 (Length: 433)
Name: NF1318_low_46
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_46 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 12 - 433
Target Start/End: Original strand, 49123565 - 49123986
Alignment:
| Q |
12 |
acagaccacaaagatcaccttgagagcaagaaatgcatttgtaattgtgaccaggcacagcaaaacctaccatttgtacaaaataacaatgaggagggat |
111 |
Q |
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| T |
49123565 |
acagaccacaaagatcaccttgagagcaagaaatgcatttgtaattgtgaccaggcacagcaaaacctaccatttgtacaaaataacaatgaggagggat |
49123664 |
T |
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| Q |
112 |
ttctaaccatgggtcttggacaaggtaaacttaagactcgtcgaacagggttcaaaccttacaaaagatgtttagtagaggccaaggaaaacaggggcgg |
211 |
Q |
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| T |
49123665 |
ttctaaccatgggtcttggacaaggtaaacttaagactcgtcgaacagggttcaaaccttacaaaagatgtttagtagaggccaaggaaaacaggggcgg |
49123764 |
T |
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| Q |
212 |
aacggcttgcaaccaagttgaagagacgggtcccaagaggatacgcctggaaggggggacttctatttgatgcttgatatatgcatgcaatcacgcaaag |
311 |
Q |
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| T |
49123765 |
aacggcttgcaaccaagttgaagagacgggtcccaagaggatacgcctggaaggggggacttctatttgatgcttgatatatgcatgcaatcacgcaaag |
49123864 |
T |
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| Q |
312 |
aaaatctttgagttttgtgcatcatttctaactacctcttggtgtctgtattgttaattttctaattcagcagctcatgaaacttgtcgtgtaggtgtgt |
411 |
Q |
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| T |
49123865 |
aaaatctttgagttttgtgcatcatttctaactacctcttggtgtctgtattgttaattttctaattcggcagctcatgaaacttgtcgtgtaggtgtgt |
49123964 |
T |
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| Q |
412 |
gtaccatattaaattactacct |
433 |
Q |
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| T |
49123965 |
gtaccatattaaattactacct |
49123986 |
T |
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