View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1318_low_5 (Length: 709)

Name: NF1318_low_5
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1318_low_5
NF1318_low_5
[»] chr1 (2 HSPs)
chr1 (30-558)||(1503966-1504485)
chr1 (650-700)||(1503826-1503872)


Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 30 - 558
Target Start/End: Complemental strand, 1504485 - 1503966
Alignment:
Q  30 gatatggctctggccctaacccaagagttgt---gactcttgcatggttgtaggagtgggtaagaaaagggaaatagcattagttttcccatactttaga 126  Q
    |||||||||||||||||||||||||||||||   |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1504485 gatatggctctggccctaacccaagagttgttgtgactcttgcatgattgtaggagtgggtaagaaaagggaaatagcattagttttcccatactttaga 1504386  T
Q  127 aaaagagaaattatacggtctcccttnnnnnnngaaatttta-----ctttctaatgtacgtacggaacggtgcagttttgttgaaaaacaatataaaca 221  Q
    ||| || |||||||||||||||||||       |||||| ||     |||||||||||||||||||||||||||||||| |||||||||||||||||||     
T  1504385 aaa-gaaaaattatacggtctcccttaaaaaaagaaattatattatactttctaatgtacgtacggaacggtgcagtttagttgaaaaacaatataaacc 1504287  T
Q  222 tgtattttccagaaaggaaaagggaaagcaaagatagattaatgtttccaaaaattttatttctaaacagctcaatttttgttaagataaccatttaacc 321  Q
    |||||||||| |||||||||||      ||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||    
T  1504286 tgtattttcctgaaaggaaaag------caaagatagattaatgtttccaaaaattttacttctgaacagctcaatttt-gttaagataaccatttaacc 1504194  T
Q  322 taataaaatcaaataattgagcttaaatggttaatgaactccaccatataataannnnnnnaggagaatcttgagtttgattcttgagtgaaatgaatat 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||       |||| ||||||||||| |||| |||||||||||||||||    
T  1504193 taataaaatcaaataattgagcttaaatggttaatgaactccaccatataacaaatttttcaggaaaatcttgagttcgatttttgagtgaaatgaatat 1504094  T
Q  422 acgaaccaagctaagcacgtcaacgctatttttgctnnnnnnnnnnntagaatatacttttggaaacgacattgataattcatgaactgaattaaatcga 521  Q
    |||||||||||      |||||||||||||||||||           ||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  1504093 acgaaccaagcg-----cgtcaacgctatttttgct-aaaagaaaaatagaatatacttttgaaaacgacattgataattcatgagctgaattaaatcga 1504000  T
Q  522 gctgctgattcaactcaattccaaaatcattagtcac 558  Q
       ||||||||||||||||||||||||||||||||||    
T  1503999 ---gctgattcaactcaattccaaaatcattagtcac 1503966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 700
Target Start/End: Complemental strand, 1503872 - 1503826
Alignment:
Q  650 aacaaccctaacatatcatttatacatatataagtgtagatggttctctgt 700  Q
    |||||||||||||||||||||||||    |||| |||||||||||||||||    
T  1503872 aacaaccctaacatatcatttatac----ataaatgtagatggttctctgt 1503826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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