View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_50 (Length: 408)
Name: NF1318_low_50
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 47367176 - 47367570
Alignment:
| Q |
1 |
cccaattcctcctgcgcgtttgaccaccaaactcttttcagctctaggatttcctcctcggtcacatatcactatttttcctgaaactttgctaggaatc |
100 |
Q |
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| T |
47367176 |
cccaattcctcctgcgcgtttgaccaccaaactcttttcagctctaggatttcctcctcggtcacatatcactatttttcctgaaactttgctaggaatc |
47367275 |
T |
|
| Q |
101 |
aaactatctgtgctgcacaggttatcactggaatcctggctgacgttagcagcataaacaagtggtagtggagagttaggtggcaattttccattgtaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
47367276 |
aaactatctgtgctgcacaggttatcactggaatcctggctgacgttagcagcataaacaagtggcagtggagagttaggtggcaattttccattgtaaa |
47367375 |
T |
|
| Q |
201 |
gagacacgccgttgtatctcttcccatttccaagggtaatataggcagggaaatcgcggtctatagttccggcaccgacagtggttatccatggtgcaac |
300 |
Q |
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| T |
47367376 |
gagacacgccgttatatctgttcccatttccaagggtaatataggcagggaaatcgcggtctatagttccggcaccgacagtggttatccatggtgcaac |
47367475 |
T |
|
| Q |
301 |
attagccaaacttgctttactaggtccaccgtttcctgctgaactggatactagtattccatgttctatggctgcaaaagttcccattgcaacag |
395 |
Q |
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| T |
47367476 |
attagccaaacttgctttactaggtccaccgtttcctgctgaactggatactagtattccatgttctatggctgcaaaagttcccattgcaacag |
47367570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 343
Target Start/End: Complemental strand, 5375175 - 5375056
Alignment:
| Q |
224 |
ccatttccaagggtaatataggcagggaaatcgcggtctatagttccggcaccgacagtggttatccatggtgcaacattagccaaacttgctttactag |
323 |
Q |
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||||||||||| || ||||| ||| ||||||||||| || ||||||||||| ||||| |||||||||||||| ||||| | ||| ||| | ||| | |
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| T |
5375175 |
ccatttccaagtgttatataactaggaaaatcgcggtcaattgttccggcaccaacagttgttatccatggtgctacatttgacaagctttcagcacttg |
5375076 |
T |
|
| Q |
324 |
gtccaccgtttcctgctgaa |
343 |
Q |
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||||||| |||||||||||| |
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| T |
5375075 |
gtccaccatttcctgctgaa |
5375056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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