View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_57 (Length: 401)
Name: NF1318_low_57
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_57 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 4e-91; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 132 - 373
Target Start/End: Complemental strand, 4825114 - 4824872
Alignment:
| Q |
132 |
gcctgctatgccttaaaacattacttcatttattttgaagtcaaaagttgaggcttgaagattgattcagttttattaatatgtttt-ttctcacaattc |
230 |
Q |
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| T |
4825114 |
gcctgctatgcattaaaacattactttttttattttgaagtcaaaagttgaggcttaaagatggattcagttttattaatatgttttattctcacaattc |
4825015 |
T |
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| Q |
231 |
cacttgatgtttgagtttccttgtaatgcaattcaatacagtttctttgtaatgtttagaagactatannnnnnngtatttaattgacatgttacttttc |
330 |
Q |
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| T |
4825014 |
tacttgatgtttgagtttccttgtaatgcaattcaatacagtttcgttgtaatgtttaaaagactgtctctttttgtatttaattgacatgttaattttc |
4824915 |
T |
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| Q |
331 |
agtttcatgataaatactactttctgttgcaaggaactagatt |
373 |
Q |
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| T |
4824914 |
agtttcatgataaatactactttctgttgcaaggaactagatt |
4824872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 280
Target Start/End: Complemental strand, 4814243 - 4814200
Alignment:
| Q |
237 |
atgtttgagtttccttgtaatgcaattcaatacagtttctttgt |
280 |
Q |
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| T |
4814243 |
atgtttgtgtttccttgtaatgcaattcaatacagtttcgttgt |
4814200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 4817350 - 4817295
Alignment:
| Q |
143 |
cttaaaacattacttcatttattttgaagtcaaaagttgaggcttgaagattgattca |
200 |
Q |
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| T |
4817350 |
cttaaaacattacttccttttttt--aagtcaaaatttgcggcttgaagattgattca |
4817295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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