View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1318_low_6 (Length: 667)
Name: NF1318_low_6
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 569; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 8 - 639
Target Start/End: Original strand, 4831014 - 4831645
Alignment:
| Q |
8 |
gagcagagattgggagtttagggtgatattgannnnnnnnnnnnncccatcagaaagtttcacaatttcagtaaagtgaaagtagacataatactcagaa |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4831014 |
gagcacagattgggagtttagggtgatattgatttttctttttttcccatcagaaagtttcacaatttcagtaaagtgaaagtagacataatactcagaa |
4831113 |
T |
|
| Q |
108 |
ttagggtctatgagtggagaccgtggacccaaatctgcataggtaaatcccaaagtgcgtgacacatttcctggttggactgcactcctcaacacttcat |
207 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4831114 |
ttacggtctatgagtggagaccgtggacccaaatctgcataggtaaatcccaaagtgtgtgacacatttcctggttggactgcactcctcaacacttcat |
4831213 |
T |
|
| Q |
208 |
ctggtaatttataagcattattattggtttccaattccatatttatggattcatctaaattcaacggataccaatcgttatatgggtgcaacaagtctgg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4831214 |
ctggtaatttataagcattattattggtttccaattccatatttatggattcatctaaattcaacggataccaatcgttatatgggtgcaacaagtctgg |
4831313 |
T |
|
| Q |
308 |
atcgcagtaccatatcctgtcataaacatcatctccgtacctagtggtcctattgtgcatgaagaaataaaatgattcggtaaaaacataaattaagagg |
407 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4831314 |
atcgcagtaccatatcctgtcatagacatcatctccgtacctagtggtcctattgtgcatgaagaaataaaatgattcagtaaaaacataaattaagagg |
4831413 |
T |
|
| Q |
408 |
tttgtgtgtgtgagatactttttatggtaacaacctacaagcacaaatgttttgaattttagcacacacataagtattactactactaggcatattgatt |
507 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4831414 |
tttgtgtgggtgagatactttttatggtaacaacctacaagcacaaatgttttgaattttagcacacacataagtattactactactaggcatattgatt |
4831513 |
T |
|
| Q |
508 |
tgtgagtgtgatccttgaaagacatgatcaaattttaacactcaccaagcctagcttaaattaaaaagtgtattgatcaatatgcctaattaatatttaa |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4831514 |
tgtgagtgtgatccttgaaagacatgatcaaattttaacactcaccaagcctagcttaaattaaaaagtgtattgatcaatatgcctaattaatatttaa |
4831613 |
T |
|
| Q |
608 |
tcactcacataaataaataccataactatgat |
639 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
4831614 |
tcactcacataaataaataccataactatgat |
4831645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 151 - 288
Target Start/End: Original strand, 4795162 - 4795299
Alignment:
| Q |
151 |
taaatcccaaagtgcgtgacacatttcctggttggactgcactcctcaacacttcatctggtaatttataagcattattattggtttccaattccatatt |
250 |
Q |
| |
|
|||||||||| | | |||||||||| ||||||| ||| |||||| || |||| ||||||||||||||||| ||||||| |||| |||||||| |
|
|
| T |
4795162 |
taaatcccaaggggtgtgacacattatttggttgggctgtactccttaatactttggatggtaatttataagcatcattattgatttctggatccatatt |
4795261 |
T |
|
| Q |
251 |
tatggattcatctaaattcaacggataccaatcgttat |
288 |
Q |
| |
|
|||||||||||| ||| ||| ||||||||||| |||| |
|
|
| T |
4795262 |
tatggattcatccaaacccaatggataccaatcattat |
4795299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 4849658 - 4849715
Alignment:
| Q |
53 |
cccatcagaaagtttcacaatttcagtaaagtgaaagtagacataatactcagaatta |
110 |
Q |
| |
|
|||||| |||| |||| |||||||| | |||||||||||||||||||| ||| ||||| |
|
|
| T |
4849658 |
cccatctgaaaatttcgcaatttcattgaagtgaaagtagacataataatcataatta |
4849715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University