View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_60 (Length: 395)
Name: NF1318_low_60
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_60 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 28 - 395
Target Start/End: Original strand, 10521433 - 10521800
Alignment:
| Q |
28 |
aaaacaaacaggttaatcttgtcgagctctcaagattcagtccttctctacgcatacttttaaggggcattggttatgcactcgttggtgatccccgact |
127 |
Q |
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| T |
10521433 |
aaaacaaacaggttaatcttgtcgagctctcaagatccggtccttctctacgcatacttttaaggggcattggttatgcactcgttggtgatccccgatt |
10521532 |
T |
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| Q |
128 |
acttaatcaactactagaggacaacgatggaaccattccagcatatatgaaaaatgatacatccttatcagaggttgaagaagatacatcctttgtatac |
227 |
Q |
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| T |
10521533 |
acttaatcaactactagaggacaacgatggaaccattccagcatatatgaaaaatgatacatccttatcagaggttgaagaagatacatcctttgtatac |
10521632 |
T |
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| Q |
228 |
cgtctaggaggaaaaattaaattcatatattattattttaagttttatgcagttgatgnnnnnnnncccgcatttttgtattgtttttcgttatagaatt |
327 |
Q |
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| T |
10521633 |
catctaggaggaaaaattaaattcatatattattattttaagttttatgcagttgatgttttttttcccgcatttttgtattgtttttcgttatagaatt |
10521732 |
T |
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| Q |
328 |
acacagatgatggtttgcactccctgctatgtaacaacgcatcttgtatatatataggaacaacaatc |
395 |
Q |
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| T |
10521733 |
acacagatgatggtttgcactccctgctatgtaacaacgcatcttgtatatatataggaacaacaatc |
10521800 |
T |
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