View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_63 (Length: 386)
Name: NF1318_low_63
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_63 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 86 - 377
Target Start/End: Complemental strand, 20757277 - 20756986
Alignment:
| Q |
86 |
catttcttgcagagacaatcaatacctttgacaaagcaagtggactattattcacaagtgcatgaaaaattgacacagcaaacagaagcatatatacttc |
185 |
Q |
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| T |
20757277 |
catttcttgcagagacaatcaatacctttgacaaagcaagtggactattattcacaaatgcatgaaaaattgacacaacaaacagaagcatctatacttc |
20757178 |
T |
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| Q |
186 |
agaaacacctctcaaaatccatatttgctgttgtgattggaagcaatgatatatttggttactttaattcaaaggatcttcaaaagaaaaacactccaca |
285 |
Q |
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| T |
20757177 |
agaatcatctctcaaaatccatatttgctgttgtgattggaagcaatgatatatttggttactttaattcaaaggatcttcaaaagaaaaacactccaca |
20757078 |
T |
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| Q |
286 |
acaatatgtggattccatggcttcctcactaaaagtgcaactacaggtaaacacaatggtttcaaattgtaattaagttactgcatattatt |
377 |
Q |
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| T |
20757077 |
acaatatgtggattccatggcttcctcactaaaagtgcaactacaggtaaacacaatggtttcaaattgtaattaagttactgcatattatt |
20756986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 86 - 336
Target Start/End: Complemental strand, 20752681 - 20752431
Alignment:
| Q |
86 |
catttcttgcagagacaatcaatacctttgacaaagcaagtggactattattcacaagtgcatgaaaaattgacacagcaaacagaagcatatatacttc |
185 |
Q |
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| T |
20752681 |
catttcttgcagagacagtcaatatctttgacaaagcaagtggactattattcacaagtgcatgaaaaattgacacaacaaacagaagcatctacacttc |
20752582 |
T |
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| Q |
186 |
agaaacacctctcaaaatccatatttgctgttgtgattggaagcaatgatatatttggttactttaattcaaaggatcttcaaaagaaaaacactccaca |
285 |
Q |
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| T |
20752581 |
agaaacacctctcaaaatccatatttgctatagtgattggaagcaatgatatatttggttactataactcaatggatcttcaaaagaaaaatactccaca |
20752482 |
T |
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| Q |
286 |
acaatatgtggattccatggcttcctcactaaaagtgcaactacaggtaaa |
336 |
Q |
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| T |
20752481 |
acaatatgtggattccatgacttcctcactaaaaatacaattacaggtaaa |
20752431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 103 - 345
Target Start/End: Complemental strand, 20800535 - 20800293
Alignment:
| Q |
103 |
atcaatacctttgacaaagcaagtggactattattcacaagtgcatgaaaaattgacacagcaaacagaagcatatatacttcagaaacacctctcaaaa |
202 |
Q |
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| T |
20800535 |
atcaatacatttaacagagcaagtggactactattcacaaatgtatgaagaatcgacaaaacaaatagaagtatcaacacttcagaaacacctctcagaa |
20800436 |
T |
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| Q |
203 |
tccatatttgctgttgtgattggaagcaatgatatatttggttactttaattcaaaggatcttcaaaagaaaaacactccacaacaatatgtggattcca |
302 |
Q |
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| T |
20800435 |
tccatcttctttgttgtgattggcaacaatgatatctttgattacttcaattcaaaggatcttcaaaagaaaaacaccccacaacagtttgtcaaatcca |
20800336 |
T |
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| Q |
303 |
tggcttcctcactaaaagtgcaactacaggtaaacacaatggt |
345 |
Q |
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| T |
20800335 |
tggcttcttcactaaaagtgcaactacaggtaagcacaatggt |
20800293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 185 - 335
Target Start/End: Original strand, 40640466 - 40640616
Alignment:
| Q |
185 |
cagaaacacctctcaaaatccatatttgctgttgtgattggaagcaatgatatatttggttactttaattcaaaggatcttcaaaagaaaaacactccac |
284 |
Q |
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|||||||| ||||||||||| || ||||||||||||||||||| ||||||| | ||||| || ||| | ||| || |||| |||||||| || |||| |
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| T |
40640466 |
cagaaacatctctcaaaatcaatttttgctgttgtgattggaaacaatgatctctttggatattttgagtcatcagaacttcgtaagaaaaataccccac |
40640565 |
T |
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| Q |
285 |
aacaatatgtggattccatggcttcctcactaaaagtgcaactacaggtaa |
335 |
Q |
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| T |
40640566 |
aacagtatgttgattccatgcttttctcactcaaactgcaactacaggtaa |
40640616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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