View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_65 (Length: 382)
Name: NF1318_low_65
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_65 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 52 - 371
Target Start/End: Original strand, 48205434 - 48205753
Alignment:
| Q |
52 |
cttgacatcttctttagccaacatttcagtatcctttgctcgctgctgcttatttctcttcccagctcccaaagtgaagcttcttcacacttttttgcaa |
151 |
Q |
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| T |
48205434 |
cttgacatcttctttagccaacatttcagtatcctttgctcgctgctgcttgtttctcttcccagctcccaaagtgaagcttcttcacacttctttgcaa |
48205533 |
T |
|
| Q |
152 |
tagaatcattggcttctccttatcactaacatgcttctccatcaacttggagtaattcaaatattcaaccttcaaagtagcagaataagagatttctatc |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48205534 |
tagaatcattggcttctccttatcactaacatgcttctccatcaacttggagtaattcaaatattcaaccttcaaagtagcagaataagagatttgtatc |
48205633 |
T |
|
| Q |
252 |
tggaaattaataaacatacaggagatcatattctttggaggattttgacgtgtttggaatcagttgttagtctcaggttcagactaatattacaaatact |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48205634 |
tggaaattaataaacatacaggagatcatattctttggaggattttgacgtgcttggaatcagttgttagtctcaggttcagactaatattacaaatact |
48205733 |
T |
|
| Q |
352 |
tcgattgctaattgagtatt |
371 |
Q |
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|||||||||||||||||||| |
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| T |
48205734 |
tcgattgctaattgagtatt |
48205753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 224
Target Start/End: Original strand, 26982248 - 26982371
Alignment:
| Q |
104 |
tttctcttcccagctcccaaagtgaagcttcttcacac-ttttttgcaatagaatcattggcttctccttatcactaacatgctt-ctccatcaacttgg |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||| ||| |||| ||| |||||| ||||||| ||||| |
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| T |
26982248 |
tttctcttcccagctcccaaagtgaagcttcttcacacaatctttgcaatacaatcattggcacctctttatgactgctatgcttgttccatcaccttgg |
26982347 |
T |
|
| Q |
202 |
agtaattcaa-atattcaaccttc |
224 |
Q |
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| |||||||| ||||||||||||| |
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| T |
26982348 |
actaattcaagatattcaaccttc |
26982371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 26999170 - 26999047
Alignment:
| Q |
104 |
tttctcttcccagctcccaaagtgaagcttcttcacac-ttttttgcaatagaatcattggcttctccttatcactaacatgcttctcc-atcaacttgg |
201 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| |||| |||||||| ||| |||||| ||| |||| ||||| |
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| T |
26999170 |
tttctcttcccagctcccaaagtgaagcttcttcacacaatctttgcaatacaatcactggcacctccttatgactgctatgcttgtcctatcaccttgg |
26999071 |
T |
|
| Q |
202 |
agtaattcaa-atattcaaccttc |
224 |
Q |
| |
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| |||||||| |||||||| |||| |
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| T |
26999070 |
actaattcaagatattcaatcttc |
26999047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 26985095 - 26984972
Alignment:
| Q |
104 |
tttctcttcccagctcccaaagtgaagcttcttcacac-ttttttgcaatagaatcattggcttctccttatcactaacatgcttctcc-atcaacttgg |
201 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||| | ||||||||| ||||| |||| |||||||| ||| |||||| ||| |||| ||||| |
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| T |
26985095 |
tttcacttcccagctcccaaagtgaagcttcttcacacaatctttgcaatacaatcactggcacctccttatgactgctatgcttgtcctatcaccttgg |
26984996 |
T |
|
| Q |
202 |
agtaattcaa-atattcaaccttc |
224 |
Q |
| |
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| |||||||| |||||||| |||| |
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| T |
26984995 |
actaattcaagatattcaatcttc |
26984972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 317
Target Start/End: Complemental strand, 34493552 - 34493499
Alignment:
| Q |
264 |
aacatacaggagatcatattctttggaggattttgacgtgtttggaatcagttg |
317 |
Q |
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|||||||| |||||||||||| | ||| |||||||| ||||||| ||||||||| |
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| T |
34493552 |
aacatacaagagatcatattcatgggaagattttgatgtgtttgaaatcagttg |
34493499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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