View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_70 (Length: 371)
Name: NF1318_low_70
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_70 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 27 - 358
Target Start/End: Complemental strand, 3961618 - 3961281
Alignment:
| Q |
27 |
catttcacttaatttttgattcaatctgatatgatgaattatcgatcatgtcaaattaacatatttaaccaaggtaaactccatatggatctcttgtaag |
126 |
Q |
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| T |
3961618 |
catttcacttaatttttgattcaatctgatatgatgaattatcaatcatgtcaaattaacatatttaaccaagataaactccatatggatctctagtaag |
3961519 |
T |
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| Q |
127 |
gacaaatattttaaattaagccttcatc------aaatttgttgactagtcatgatagataatgaacagtgtgtacaaacaagtaccttagaaagctatt |
220 |
Q |
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| T |
3961518 |
gacaaatattttaaattaagccttcatcttggctaaatttgttgactagtcatgatagataatgaacagtgtttacaaacaagtaccttagaaagctatt |
3961419 |
T |
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| Q |
221 |
tctcaacttgatctttaaccattcattcttcttttatttgcaagtaaattactgaccatgaattaatattatacctaattgatgctctggatatgttagg |
320 |
Q |
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| T |
3961418 |
tctcaacttgatctttaaccattcattcttcttttatttgcaagtaaattactgaccatgaattaatattatacctaattgatgctctggatatgttagg |
3961319 |
T |
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| Q |
321 |
aatgagattatactcttgctcctatatgttgaaacttc |
358 |
Q |
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| T |
3961318 |
aatgagattatactcttgttcctatatgttgaaacttc |
3961281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 325 - 359
Target Start/End: Original strand, 3806474 - 3806508
Alignment:
| Q |
325 |
agattatactcttgctcctatatgttgaaacttca |
359 |
Q |
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| T |
3806474 |
agattatactctttctcctatatgttgaaacttca |
3806508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 325 - 359
Target Start/End: Original strand, 3813117 - 3813151
Alignment:
| Q |
325 |
agattatactcttgctcctatatgttgaaacttca |
359 |
Q |
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| T |
3813117 |
agattatactctttctcctatatgttgaaacttca |
3813151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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