View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1318_low_71 (Length: 367)

Name: NF1318_low_71
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1318_low_71
NF1318_low_71
[»] chr5 (1 HSPs)
chr5 (1-339)||(2660115-2660449)
[»] chr3 (2 HSPs)
chr3 (87-184)||(30443742-30443834)
chr3 (124-160)||(46169915-46169951)
[»] scaffold0097 (1 HSPs)
scaffold0097 (124-179)||(37930-37985)
[»] chr8 (1 HSPs)
chr8 (124-181)||(21484981-21485038)
[»] chr4 (1 HSPs)
chr4 (120-173)||(12276845-12276898)
[»] chr7 (1 HSPs)
chr7 (88-120)||(18096940-18096972)
[»] chr1 (2 HSPs)
chr1 (144-184)||(6282583-6282623)
chr1 (124-156)||(48377845-48377877)


Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 2660449 - 2660115
Alignment:
Q  1 attggagtgaaaacctgtataatttatgaaaatttgcatgaaaacctctc-gacatatagcattgatgttatgtcgacaaaatgtcattttttataagag 99  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2660449 attggagtgaaaacctgtattatttatgaaaatttgcatgaaaacctctcagacatatagcattgatgttatgtcgacaaaatgtcattttttataagag 2660350  T
Q  100 acaaatggatcaacaaaagttaagttgatgtatttagtctacattataaatcaaatatattaacttttgttgactaatttgtctccatataaaaagaagt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2660349 acaaatggatcaacaaaagttaagttgatgtatttagtctacattataaatcaaatatattaacttttgttgactaatttgtctccatataaaaagaagt 2660250  T
Q  200 cttgtaatgctaactaataaagtatactctctatcattgtcatcatttatataatctccactaatttctcacatgcatcatagatacatattctacatat 299  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||     | || ||||    
T  2660249 cttgtaatgctaactaataaagtatactctctttcattgtcatcatttatataatctccactaatttctcacatgcatcatagata-----tgtatatat 2660155  T
Q  300 gtatccacgagtacctagaagtatcatatatgtatctagt 339  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2660154 gtatccacgagtacctagaagtatcatatatgtatctagt 2660115  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 184
Target Start/End: Original strand, 30443742 - 30443834
Alignment:
Q  87 ttttttataagagacaaatggatcaacaaaagttaagttgatgtatttagtctacattataaatcaaatatattaacttttgttgactaatttgtctc 184  Q
    |||||||||||| |||||||| |||||||||||||     |||||||| ||||| ||||| || |||||| || |||||| |||||| ||||||||||    
T  30443742 ttttttataagaaacaaatgggtcaacaaaagtta-----atgtatttggtctatattatgaaccaaatacatcaactttagttgaccaatttgtctc 30443834  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 46169915 - 46169951
Alignment:
Q  124 ttgatgtatttagtctacattataaatcaaatatatt 160  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  46169915 ttgatgtatttagtctatattataaatcagatatatt 46169951  T

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Target: scaffold0097 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 37985 - 37930
Alignment:
Q  124 ttgatgtatttagtctacattataaatcaaatatattaacttttgttgactaattt 179  Q
    ||||||||||| || || ||| |||| |||||| ||||||||||||||||||||||    
T  37985 ttgatgtatttggtataaattttaaaccaaatacattaacttttgttgactaattt 37930  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 21484981 - 21485038
Alignment:
Q  124 ttgatgtatttagtctacattataaatcaaatatattaacttttgttgactaatttgt 181  Q
    ||||||||||||||||||||||| || |||||| || || ||| |||||| |||||||    
T  21484981 ttgatgtatttagtctacattatgaaccaaatacatcaattttggttgaccaatttgt 21485038  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 12276898 - 12276845
Alignment:
Q  120 taagttgatgtatttagtctacattataaatcaaatatattaacttttgttgac 173  Q
    |||||||||||||||||| || ||| | ||||||||| ||||||||||| ||||    
T  12276898 taagttgatgtatttagtataaattttgaatcaaatacattaacttttgctgac 12276845  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 18096940 - 18096972
Alignment:
Q  88 tttttataagagacaaatggatcaacaaaagtt 120  Q
    |||||||||||||||||||| ||||||||||||    
T  18096940 tttttataagagacaaatgggtcaacaaaagtt 18096972  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 6282623 - 6282583
Alignment:
Q  144 tataaatcaaatatattaacttttgttgactaatttgtctc 184  Q
    |||||| |||||||||||| ||||||||||| |||||||||    
T  6282623 tataaaccaaatatattaatttttgttgactcatttgtctc 6282583  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 48377845 - 48377877
Alignment:
Q  124 ttgatgtatttagtctacattataaatcaaata 156  Q
    ||||||||||||||||| |||||||||||||||    
T  48377845 ttgatgtatttagtctatattataaatcaaata 48377877  T

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