View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_72 (Length: 365)
Name: NF1318_low_72
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_72 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 9 - 336
Target Start/End: Original strand, 27447935 - 27448261
Alignment:
| Q |
9 |
atcataggtaatggggaaaatatcattttttggcttgatccctggcttgacaaatctgttgcttttattcttaacttgccaggcaacgttcatagcagtt |
108 |
Q |
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| T |
27447935 |
atcataggtaatggggaaaatatcaatttttggcttgatccgtggcttgacaac-ctgttgcttctattcttaacttgccaggcaacattcatagtagtt |
27448033 |
T |
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| Q |
109 |
taatagatagggnnnnnnnnnnnnnactggcacttccctcaacatgttttggactctttccctaacctgaatcaacttgtcatgcaagtatctctcccca |
208 |
Q |
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| T |
27448034 |
taatagatagggtttctgattttttaccggcacttccctcaacatgttttggactctttccctaacctgaatcaacttgtcatgcaagtaactctcccta |
27448133 |
T |
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| Q |
209 |
gtgagcctaaggaagacaaattagtttggaaaagaaactcaacatgagatctttctattaaggaggctttttcattcaaatatggcacatgacaaaatat |
308 |
Q |
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||||||||||||||||||||||||||||||||||| || |||| ||||||||||| |||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
27448134 |
gtgagcctaaggaagacaaattagtttggaaaagatgctaaacaggagatctttctcttaaagaggctttttcattcaaatatggcacaggacaaaatat |
27448233 |
T |
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| Q |
309 |
ttcttgggcaaaaactctacggtgccct |
336 |
Q |
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| T |
27448234 |
ttcttgggcaaaaacgctatggtgccct |
27448261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 27460286 - 27460396
Alignment:
| Q |
9 |
atcataggtaatggggaaaatatcattttttggcttgatccctggcttgacaaatctgttgcttttattcttaacttgccaggcaacgttcatagcagtt |
108 |
Q |
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| T |
27460286 |
atcataggtaatggggaaaatatcaatttttggcttgatccgtggcttgac-aacctgttgcttctattcttaacttgccaggcaacattcatagtagtt |
27460384 |
T |
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| Q |
109 |
taatagataggg |
120 |
Q |
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|||||||||||| |
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| T |
27460385 |
taatagataggg |
27460396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 48709435 - 48709488
Alignment:
| Q |
9 |
atcataggtaatggggaaaatatcattttttggcttgatccctggcttgacaaa |
62 |
Q |
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|||||||||||||| || ||||| | ||||||||||||| ||||| |||||||| |
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| T |
48709435 |
atcataggtaatggagagaatattaatttttggcttgatacctggattgacaaa |
48709488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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