View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1318_low_79 (Length: 355)
Name: NF1318_low_79
Description: NF1318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1318_low_79 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 8946204 - 8946558
Alignment:
| Q |
1 |
cttaagtcttgaaaactatactcttcttttctaaagaagtcgaaatttgatatatttgatatgaaaacagctccaacaacgtttgctcgatacacattag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
8946204 |
cttaagtcttgaaaactatactcttcttttctaaagaaatcaaaatttgatatatttgatatgaaaacagctccaacaacgtttgcttgatacacataag |
8946303 |
T |
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| Q |
101 |
tatattgttcaataatatctccatcgtcacaaaccacaatattgttcttcactttgattaattctgtaacattgtcgcacaaactcatgaaaacaattgg |
200 |
Q |
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| T |
8946304 |
aatattgttcaataatatctccatcgtcacaaaccacaatattgttcttcactttgattaattctgtaacattgtcgcacaaacccatgaaaacaattgg |
8946403 |
T |
|
| Q |
201 |
caaattgctagcagagaaatttcctagataattagaccaacctgtgagtgagactccactaccaagtgtaagattcgcatgaaactcacgatccacagta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||| |||| |
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| T |
8946404 |
caaattgctagcagagaaatttcctagataattagaccaacctgtgagtgagactccattaccaagtgtaagagtcgcatgaaattcacgatccatagta |
8946503 |
T |
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| Q |
301 |
ccagcagcaacagttgtcaaccaaggtgttccattgcgaagagttttaaaatcgg |
355 |
Q |
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| T |
8946504 |
ccagcagcaacagttgtcaaccatggtgttccattgcgaagagttttaaaatcgg |
8946558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 148 - 350
Target Start/End: Complemental strand, 8974135 - 8973933
Alignment:
| Q |
148 |
ttcactttgattaattctgtaacattgtcgcacaaactcatgaaaacaattggcaaattgctagcagagaaatttcctagataattagaccaacctgtga |
247 |
Q |
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| T |
8974135 |
ttcactttgattagttgtgtaatattgtcacacttacccatgaaaacaattggaatattactagcagagaagtttcctagataaaaagataagccagaga |
8974036 |
T |
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| Q |
248 |
gtgagactccactaccaagtgtaagattcgcatgaaactcacgatccacagtaccagcagcaacagttgtcaaccaaggtgttccattgcgaagagtttt |
347 |
Q |
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| T |
8974035 |
gtgagactccattaccaagtgtaagattcccacgaaactcacgatccaaagtacttgcagcaacggttattacccatggtattccattgtgaagagtttt |
8973936 |
T |
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| Q |
348 |
aaa |
350 |
Q |
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||| |
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| T |
8973935 |
aaa |
8973933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 127 - 350
Target Start/End: Complemental strand, 8962760 - 8962537
Alignment:
| Q |
127 |
tcacaaaccacaatattgttcttcactttgattaattctgtaacattgtcgcacaaactcatgaaaacaattggcaaattgctagcagagaaatttccta |
226 |
Q |
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| T |
8962760 |
tcacaaaccacaatctcgctcttcactctgattagttctgtaaaattgtcacacatacctttgaaaacaatgggaatattactagcagagaagtttccta |
8962661 |
T |
|
| Q |
227 |
gataattagaccaacctgtgagtgagactccactaccaagtgtaagattcgcatgaaactcacgatccacagtaccagcagcaacagttgtcaaccaagg |
326 |
Q |
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| T |
8962660 |
tataggaagagaagccggtgagtgagactccattaccaagtgtaagattcccaaaaaattcacgatctaaagtactagcagcaacagttatcacccatgg |
8962561 |
T |
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| Q |
327 |
tgttccattgcgaagagttttaaa |
350 |
Q |
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| T |
8962560 |
tattccattgtgaagagtgttaaa |
8962537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 9949680 - 9949775
Alignment:
| Q |
127 |
tcacaaaccacaatattgttcttcactttgattaattctgtaacattgtcgcacaaactcatgaaaacaattggcaaattgctagcagagaaattt |
222 |
Q |
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||||||| |||||| || | ||||| ||| |||||||| |||||||||| |||| ||||||||||||||||| |||| | ||||||| |||||| |
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| T |
9949680 |
tcacaaatcacaatttttctattcacattgtttaattctttaacattgtcacacatactcatgaaaacaattgaaaaatcgttagcagataaattt |
9949775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 346
Target Start/End: Complemental strand, 8957611 - 8957527
Alignment:
| Q |
262 |
ccaagtgtaagattcgcatgaaactcacgatccacagtaccagcagcaacagttgtcaaccaaggtgttccattgcgaagagttt |
346 |
Q |
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| T |
8957611 |
ccaagtgtaagggtcccttgaaattctctatccatagttccagcagccacagttatgacccaaggtgttccattgtgaagagttt |
8957527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 127 - 335
Target Start/End: Original strand, 21687478 - 21687686
Alignment:
| Q |
127 |
tcacaaaccacaatattgttcttcactttgattaattctgtaacattgtcgcacaaactcatgaaaacaattggcaaattgctagcagagaaatttccta |
226 |
Q |
| |
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|||||||||||||| || |||||||| || |||||||| |||||||||| |||| || ||| ||||||||||| |||||| |||||||||| ||||||| |
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| T |
21687478 |
tcacaaaccacaatctttctcttcactgtgtttaattctttaacattgtcacacatacccataaaaacaattggaaaattgttagcagagaagtttccta |
21687577 |
T |
|
| Q |
227 |
gataattagaccaacctgtgagtgagactccactaccaagtgtaagattcgcatgaaactcacgatccacagtaccagcagcaacagttgtcaaccaagg |
326 |
Q |
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|||| |||| |||| ||||||||||||||| |||||||||||| | | | ||| |||||||||| ||||||||||||||||||| ||| ||| || |
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| T |
21687578 |
gatagaaagacaaaccagtgagtgagactccattaccaagtgtaacagttcctaaaaattcacgatccaaagtaccagcagcaacagttatcacccatgg |
21687677 |
T |
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| Q |
327 |
tgttccatt |
335 |
Q |
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| T |
21687678 |
tattccatt |
21687686 |
T |
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